Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_140390.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
SmLINC01230-IBu 0 6.45 0.00 2.13 3.20
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC04693-IBu 0 7.21 3.85 4.35 6.49
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
SmLINC06667-IBu 0 5.49 2.05 4.25 3.56
Smp_140390.1 0 12.76 10.19 10.82 11.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_140390.1 SmLINC00787-IBu 0.90 3.16e-06 1.00e-04
Smp_140390.1 SmLINC01230-IBu 0.92 9.16e-07 4.82e-05
Smp_140390.1 SmLINC01429-IBu 0.87 1.75e-05 3.00e-04
Smp_140390.1 SmLINC01979-IBu 0.80 3.00e-04 3.20e-03
Smp_140390.1 SmLINC03116-IBu 0.89 5.81e-06 1.00e-04
Smp_140390.1 SmLINC04693-IBu 0.95 5.71e-08 6.98e-06
Smp_140390.1 SmLINC06436-IBu 0.83 1.00e-04 1.40e-03
Smp_140390.1 SmLINC06667-IBu 0.94 6.41e-08 7.56e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
SmLINC01230-IBu 0 6.45 0.00 2.13 3.20
SmLINC01678-IBu 0 6.35 3.79 3.76 1.84
SmLINC02098-IBu 0 4.85 1.69 1.33 1.30
SmLINC03051-IBu 0 5.29 2.78 1.72 3.18
SmLINC03427-IBu 0 2.04 -1.20 -1.84 -5.23
SmLINC03553-IBu 0 3.76 0.25 -1.52 -3.63
SmLINC04693-IBu 0 7.21 3.85 4.35 6.49
SmLINC05743-IBu 0 1.40 -1.60 -3.59 -3.33
SmLINC06508-IBu 0 1.84 -1.79 -1.80 -3.69
SmLINC06587-IBu 0 3.78 0.84 0.16 -1.23
SmLINC06667-IBu 0 5.49 2.05 4.25 3.56
Smp_046690.1 0 2.98 1.68 -1.29 -1.41
Smp_140390.1 0 12.76 10.19 10.82 11.68
Smp_142120.1 0 2.79 0.55 -2.29 -1.47
Smp_152770.1 0 4.62 0.47 2.45 1.74
Smp_187410.1 0 1.21 -3.66 -1.99 -2.90
Smp_202840.1 0 4.66 1.62 -3.75 1.23
Smp_203820.1 0 3.17 -0.24 -1.93 -3.97

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_140390.1 SmLINC00787-IBu 0.90 3.16e-06 1.00e-04
Smp_140390.1 SmLINC01230-IBu 0.92 9.16e-07 5.01e-05
Smp_140390.1 SmLINC01678-IBu 0.93 2.55e-07 2.06e-05
Smp_140390.1 SmLINC02098-IBu 0.95 4.38e-08 6.17e-06
Smp_140390.1 SmLINC03051-IBu 0.90 3.82e-06 1.00e-04
Smp_140390.1 SmLINC03427-IBu 0.91 1.94e-06 8.53e-05
Smp_140390.1 SmLINC03553-IBu 0.90 4.46e-06 1.00e-04
Smp_140390.1 SmLINC04693-IBu 0.95 5.71e-08 7.38e-06
Smp_140390.1 SmLINC05743-IBu 0.91 2.43e-06 9.98e-05
Smp_140390.1 SmLINC06508-IBu 0.90 4.57e-06 1.00e-04
Smp_140390.1 SmLINC06587-IBu 0.93 3.40e-07 2.51e-05
Smp_140390.1 SmLINC06667-IBu 0.94 6.41e-08 7.99e-06
Smp_046690.1 Smp_140390.1 0.90 3.29e-06 1.00e-04
Smp_142120.1 Smp_140390.1 0.91 1.59e-06 7.41e-05
Smp_152770.1 Smp_140390.1 0.94 1.33e-07 1.32e-05
Smp_187410.1 Smp_140390.1 0.92 5.28e-07 3.41e-05
Smp_202840.1 Smp_140390.1 0.93 2.06e-07 1.78e-05
Smp_203820.1 Smp_140390.1 0.90 3.33e-06 1.00e-04