Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_140380.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_140380.1 0 3.20 2.93 6.07 6.54

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_140380.1 SmLINC00171-IBu 0.88 1.08e-05 2.00e-04
Smp_140380.1 SmLINC00376-IBu 0.81 2.00e-04 2.40e-03
Smp_140380.1 SmLINC00525-IBu 0.80 2.00e-04 3.00e-03
Smp_140380.1 SmLINC00548-IBu 0.91 1.68e-06 7.42e-05
Smp_140380.1 SmLINC00633-IBu 0.84 8.83e-05 1.20e-03
Smp_140380.1 SmLINC01066-IBu 0.87 2.31e-05 4.00e-04
Smp_140380.1 SmLINC01084-IBu 0.81 2.00e-04 2.50e-03
Smp_140380.1 SmLINC01139-IBu 0.83 9.99e-05 1.40e-03
Smp_140380.1 SmLINC01231-IBu 0.93 3.48e-07 2.44e-05
Smp_140380.1 SmLINC01431-IBu 0.87 2.39e-05 5.00e-04
Smp_140380.1 SmLINC01538-IBu 0.83 1.00e-04 1.40e-03
Smp_140380.1 SmLINC01746-IBu 0.82 1.00e-04 1.90e-03
Smp_140380.1 SmLINC02084-IBu 0.87 1.75e-05 3.00e-04
Smp_140380.1 SmLINC02545-IBu 0.86 2.68e-05 5.00e-04
Smp_140380.1 SmLINC02546-IBu 0.95 1.56e-08 2.88e-06
Smp_140380.1 SmLINC03108-IBu 0.86 2.73e-05 5.00e-04
Smp_140380.1 SmLINC03309-IBu 0.85 5.31e-05 8.00e-04
Smp_140380.1 SmLINC03693-IBu 0.83 1.00e-04 1.60e-03
Smp_140380.1 SmLINC03927-IBu 0.88 1.41e-05 3.00e-04
Smp_140380.1 SmLINC04432-IBu 0.87 2.34e-05 4.00e-04
Smp_140380.1 SmLINC04475-IBu 0.83 1.00e-04 1.50e-03
Smp_140380.1 SmLINC04684-IBu 0.94 1.19e-07 1.16e-05
Smp_140380.1 SmLINC05147-IBu 0.84 7.62e-05 1.10e-03
Smp_140380.1 SmLINC05258-IBu 0.86 2.54e-05 5.00e-04
Smp_140380.1 SmLINC06221-IBu 0.80 2.00e-04 3.00e-03
Smp_140380.1 SmLINC06415-IBu 0.87 1.77e-05 4.00e-04
Smp_140380.1 SmLINC06536-IBu 0.87 1.80e-05 4.00e-04
Smp_140380.1 SmLINC06543-IBu 0.82 1.00e-04 2.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_031770.10 0 0.0 0.00 10.09 10.31
Smp_095410.1 0 0.0 0.00 10.39 11.31
Smp_140380.1 0 3.2 2.93 6.07 6.54

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031770.10 Smp_140380.1 0.97 8.13e-10 4.46e-07
Smp_095410.1 Smp_140380.1 0.90 4.00e-06 1.00e-04