Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_140270.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_140270.1 0 -2.83 -3.04 -4.31 -3.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_140270.1 SmLINC04957-IBu 0.89 5.56e-06 1.00e-04
Smp_140270.1 SmLINC06890-IBu 0.96 2.49e-09 8.53e-07
Smp_140270.1 SmLINC06903-IBu 0.88 9.19e-06 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_007270.2 0 -4.80 -3.78 -12.58 -12.58
Smp_032980.1 0 -3.49 -10.60 -12.19 -12.01
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_055770.1 0 -5.16 -5.96 -12.28 -12.28
Smp_061940.2 0 -3.16 -5.22 -11.34 -15.89
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05
Smp_140270.1 0 -2.83 -3.04 -4.31 -3.33
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_140270.1 Smp_007270.2 0.90 3.61e-06 1.00e-04
Smp_032980.1 Smp_140270.1 0.90 3.62e-06 1.00e-04
Smp_043670.2 Smp_140270.1 0.97 5.63e-10 3.52e-07
Smp_055770.1 Smp_140270.1 0.92 8.60e-07 4.80e-05
Smp_140270.1 Smp_061940.2 0.91 2.01e-06 8.75e-05
Smp_140270.1 Smp_079970.1 0.94 1.85e-07 1.65e-05
Smp_140270.1 Smp_096020.1 0.90 3.10e-06 1.00e-04
Smp_140270.1 Smp_152780.1 0.91 2.13e-06 9.10e-05
Smp_140270.1 Smp_182890.1 0.96 8.18e-09 2.00e-06
Smp_140270.1 Smp_186130.1 0.96 8.84e-09 2.10e-06
Smp_205860.1 Smp_140270.1 0.90 4.69e-06 1.00e-04
Smp_206200.1 Smp_140270.1 0.92 1.02e-06 5.41e-05