Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_140130.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_140130.1 0 1.66 2.18 -1.05 -2.58

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_140130.1 SmLINC00372-IBu 0.86 3.46e-05 6.00e-04
Smp_140130.1 SmLINC01316-IBu 0.89 6.94e-06 2.00e-04
Smp_140130.1 SmLINC01979-IBu 0.81 1.00e-04 2.20e-03
Smp_140130.1 SmLINC02646-IBu 0.90 3.53e-06 1.00e-04
Smp_140130.1 SmLINC04074-IBu 0.80 2.00e-04 2.90e-03
Smp_140130.1 SmLINC06646-IBu 0.96 5.20e-09 1.38e-06
Smp_140130.1 SmLINC06700-IBu 0.85 5.80e-05 9.00e-04
Smp_140130.1 SmLINC06836-IBu 0.82 1.00e-04 2.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_033950.3 0 10.15 11.01 9.52 8.41
Smp_040970.3 0 11.70 13.01 5.20 8.78
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_140130.1 0 1.66 2.18 -1.05 -2.58
Smp_141630.4 0 12.63 13.76 12.50 12.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_140130.1 Smp_017650.1 0.97 2.82e-10 2.26e-07
Smp_140130.1 Smp_021340.3 0.96 7.18e-09 1.83e-06
Smp_140130.1 Smp_033950.3 0.93 5.11e-07 3.33e-05
Smp_140130.1 Smp_040970.3 0.90 4.22e-06 1.00e-04
Smp_140130.1 Smp_059340.3 0.97 2.26e-09 8.61e-07
Smp_059530.1 Smp_140130.1 0.92 7.93e-07 4.53e-05
Smp_062610.2 Smp_140130.1 0.93 3.30e-07 2.46e-05
Smp_140130.1 Smp_083380.2 0.95 4.06e-08 5.87e-06
Smp_140130.1 Smp_084940.2 0.92 5.78e-07 3.63e-05
Smp_140130.1 Smp_098370.1 0.93 2.52e-07 2.04e-05
Smp_140130.1 Smp_099160.4 0.93 2.84e-07 2.22e-05
Smp_103540.1 Smp_140130.1 0.93 2.94e-07 2.27e-05
Smp_140130.1 Smp_141630.4 0.90 3.02e-06 1.00e-04