Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_139980.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_139980.1 0 1.20 1.27 -1.25 -4.01

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_139980.1 SmLINC00372-IBu 0.84 6.00e-05 9.00e-04
Smp_139980.1 SmLINC01316-IBu 0.85 4.10e-05 7.00e-04
Smp_139980.1 SmLINC02646-IBu 0.81 2.00e-04 2.50e-03
Smp_139980.1 SmLINC03395-IBu 0.89 7.81e-06 2.00e-04
Smp_139980.1 SmLINC03443-IBu 0.82 1.00e-04 1.80e-03
Smp_139980.1 SmLINC04074-IBu 0.93 5.00e-07 3.14e-05
Smp_139980.1 SmLINC06489-IBu 0.80 2.00e-04 2.90e-03
Smp_139980.1 SmLINC06490-IBu 0.85 5.18e-05 8.00e-04
Smp_139980.1 SmLINC06646-IBu 0.88 1.14e-05 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_139980.1 0 1.20 1.27 -1.25 -4.01
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_139980.1 Smp_059340.3 0.91 1.65e-06 7.61e-05
Smp_090930.5 Smp_139980.1 0.91 1.63e-06 7.55e-05
Smp_139980.1 Smp_168800.1 0.92 6.47e-07 3.93e-05