Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_139940.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_139940.1 0 3.07 4.50 -0.39 -2.02

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_139940.1 SmLINC00372-IBu 0.99 5.56e-14 1.02e-09
Smp_139940.1 SmLINC01316-IBu 0.89 8.45e-06 2.00e-04
Smp_139940.1 SmLINC02646-IBu 0.80 2.00e-04 3.00e-03
Smp_139940.1 SmLINC04430-IBu 0.91 1.31e-06 6.24e-05
Smp_139940.1 SmLINC04947-IBu 0.88 1.50e-05 3.00e-04
Smp_139940.1 SmLINC05559-IBu 0.95 2.03e-08 3.45e-06
Smp_139940.1 SmLINC06490-IBu 0.81 2.00e-04 2.70e-03
Smp_139940.1 SmLINC06700-IBu 0.91 1.40e-06 6.54e-05
Smp_139940.1 SmLINC06836-IBu 0.98 3.67e-11 5.66e-08
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_139940.1 0 3.07 4.50 -0.39 -2.02
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 Smp_139940.1 0.92 7.49e-07 4.35e-05
Smp_139940.1 Smp_032120.1 0.98 5.24e-11 7.75e-08
Smp_034840.1 Smp_139940.1 0.93 2.27e-07 1.90e-05
Smp_036270.3 Smp_139940.1 0.94 1.09e-07 1.15e-05
Smp_059340.3 Smp_139940.1 0.91 2.10e-06 9.02e-05
Smp_059530.1 Smp_139940.1 0.90 3.10e-06 1.00e-04
Smp_062070.1 Smp_139940.1 0.96 1.24e-08 2.63e-06
Smp_063650.3 Smp_139940.1 0.92 8.68e-07 4.83e-05
Smp_084940.2 Smp_139940.1 0.94 9.67e-08 1.05e-05
Smp_098370.1 Smp_139940.1 0.91 1.25e-06 6.26e-05
Smp_103540.1 Smp_139940.1 0.95 3.64e-08 5.44e-06
Smp_138080.1 Smp_139940.1 0.90 3.81e-06 1.00e-04
Smp_159070.3 Smp_139940.1 0.98 8.43e-11 1.04e-07
Smp_159150.1 Smp_139940.1 0.94 1.70e-07 1.56e-05
Smp_200120.1 Smp_139940.1 0.93 4.23e-07 2.92e-05