Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_139700.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC03406-IBu 0 4.88 2.89 -1.93 3.48
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
SmLINC05178-IBu 0 3.85 -0.08 -1.72 -5.31
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC05888-IBu 0 4.50 1.82 -0.36 -2.39
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
SmLINC06669-IBu 0 8.70 4.94 4.70 6.60
Smp_139700.1 0 6.89 4.15 2.03 5.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_139700.1 SmLINC00026-IBu 0.80 3.00e-04 3.30e-03
Smp_139700.1 SmLINC00893-IBu 0.81 2.00e-04 2.40e-03
Smp_139700.1 SmLINC03406-IBu 0.84 7.15e-05 1.10e-03
Smp_139700.1 SmLINC03443-IBu 0.80 2.00e-04 3.10e-03
Smp_139700.1 SmLINC04129-IBu 0.82 1.00e-04 2.00e-03
Smp_139700.1 SmLINC04144-IBu 0.80 3.00e-04 3.40e-03
Smp_139700.1 SmLINC04178-IBu 0.83 9.86e-05 1.40e-03
Smp_139700.1 SmLINC04940-IBu 0.80 2.00e-04 2.80e-03
Smp_139700.1 SmLINC05178-IBu 0.89 7.13e-06 2.00e-04
Smp_139700.1 SmLINC05840-IBu 0.82 1.00e-04 1.90e-03
Smp_139700.1 SmLINC05887-IBu 0.86 3.02e-05 5.00e-04
Smp_139700.1 SmLINC05888-IBu 0.86 3.37e-05 6.00e-04
Smp_139700.1 SmLINC06138-IBu 0.86 3.37e-05 6.00e-04
Smp_139700.1 SmLINC06436-IBu 0.84 7.46e-05 1.10e-03
Smp_139700.1 SmLINC06669-IBu 0.87 2.47e-05 5.00e-04