Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_139540.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
Smp_139540.2 0 4.25 2.46 5.22 5.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_139540.2 SmLINC00376-IBu 0.89 6.20e-06 1.00e-04
Smp_139540.2 SmLINC01171-IBu 0.87 1.82e-05 4.00e-04
Smp_139540.2 SmLINC03236-IBu 0.94 1.10e-07 1.09e-05
Smp_139540.2 SmLINC05990-IBu 0.83 1.00e-04 1.40e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_083990.2 0 9.99 8.37 12.41 12.60
Smp_139540.2 0 4.25 2.46 5.22 5.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_083990.2 Smp_139540.2 0.92 1.09e-06 5.67e-05