Schistosoma mansoni lncRNAs Database

This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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2. Smp_139090.2

Smp_139090.2 Data

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Correlation between Smp_139090.2 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Expression Fold Change Data [log₂(FC)] - Download data

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Pearson Correlation Coefficient Data - Download data

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Correlation between Smp_139090.2 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Expression Fold Change Data [log₂(FC)] - Download data

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Pearson Correlation Coefficient Data - Download data

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Correlation between Smp_139090.2 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Expression Fold Change Data [log₂(FC)] - Download data

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Gene ID	Cerc	3S	24S	Male	Female
Smp_033950.3	0	10.15	11.01	9.52	8.41
Smp_092320.2	0	10.35	10.97	10.62	9.79
Smp_139090.2	0	10.81	12.07	11.53	10.71

Pearson Correlation Coefficient Data - Download data

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Compared Gene	Gene	Pearson Correlation Value	p-value	B.-H. adjusted p-value
Smp_033950.3	Smp_139090.2	0.91	1.73e-06	7.86e-05
Smp_092320.2	Smp_139090.2	0.91	1.97e-06	8.63e-05