Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_138730.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC04387-IBu 0 -2.15 -6.76 0.33 0.40
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
Smp_138730.1 0 3.13 0.56 4.92 4.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_138730.1 SmLINC03542-IBu 0.81 2.00e-04 2.50e-03
Smp_138730.1 SmLINC04387-IBu 0.80 2.00e-04 3.10e-03
Smp_138730.1 SmLINC04521-IBu 0.85 5.37e-05 8.00e-04
Smp_138730.1 SmLINC04759-IBu 0.89 7.69e-06 2.00e-04
Smp_138730.1 SmLINC06145-IBu 0.86 2.79e-05 5.00e-04