Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_138080.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_138080.1 0 4.97 10.75 -3.79 3.75

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_138080.1 SmLINC00372-IBu 0.90 4.24e-06 1.00e-04
Smp_138080.1 SmLINC02026-IBu 0.84 8.50e-05 1.20e-03
Smp_138080.1 SmLINC04430-IBu 0.96 3.71e-09 1.10e-06
Smp_138080.1 SmLINC04947-IBu 0.88 1.43e-05 3.00e-04
Smp_138080.1 SmLINC05559-IBu 0.94 9.08e-08 9.60e-06
Smp_138080.1 SmLINC06700-IBu 0.81 2.00e-04 2.30e-03
Smp_138080.1 SmLINC06836-IBu 0.90 4.51e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00192-IBu 0 0.61 2.35 -8.28 -4.07
SmLINC00194-IBu 0 7.19 10.94 6.02 3.20
SmLINC00195-IBu 0 2.69 5.95 0.00 0.00
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01077-IBu 0 2.08 4.52 -1.46 -0.43
SmLINC01369-IBu 0 0.67 2.43 -5.36 -2.51
SmLINC01499-IBu 0 7.87 12.99 9.91 6.54
SmLINC02974-IBu 0 4.39 7.22 4.18 3.33
SmLINC03924-IBu 0 0.69 2.22 -1.76 -2.59
SmLINC04077-IBu 0 1.23 3.96 -1.93 -1.93
SmLINC04219-IBu 0 -1.93 4.04 -1.93 -1.93
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05301-IBu 0 3.47 8.11 4.71 0.61
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06039-IBu 0 4.57 7.66 4.22 0.00
SmLINC06183-IBu 0 1.58 3.42 -7.62 -7.62
SmLINC06184-IBu 0 0.30 2.70 -7.31 -7.31
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
SmLINC06953-IBu 0 -0.76 1.41 -2.13 -3.45
Smp_010110.3 0 0.00 7.37 4.59 5.00
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_014660.1 0 1.27 2.34 -5.37 -7.50
Smp_016750.1 0 2.12 4.97 1.57 -2.57
Smp_029940.1 0 0.49 2.88 -3.66 -1.65
Smp_035640.1 0 0.66 2.47 -3.45 -3.92
Smp_036470.1 0 -1.93 1.42 -1.69 -3.55
Smp_038960.1 0 2.10 5.13 3.08 3.41
Smp_042090.3 0 0.00 11.29 0.00 0.00
Smp_048520.3 0 -2.64 4.09 0.83 -0.55
Smp_055420.1 0 -4.89 5.31 -4.89 -4.89
Smp_060190.4 0 -0.15 1.63 -8.76 -8.76
Smp_075220.3 0 -0.21 1.05 -2.86 -3.43
Smp_076040.2 0 -0.64 1.55 -9.83 -9.83
Smp_076650.1 0 0.65 2.86 -0.34 -4.53
Smp_078010.1 0 -2.61 3.58 -0.01 -6.74
Smp_084600.2 0 1.97 4.18 -1.81 0.75
Smp_084940.1 0 -2.11 1.80 -3.80 -4.78
Smp_093790.1 0 2.46 6.22 -0.90 5.51
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_106750.1 0 0.07 1.73 -5.83 -8.52
Smp_112520.1 0 1.59 3.68 -6.44 -6.44
Smp_115510.1 0 0.70 2.56 -0.33 -4.70
Smp_123920.1 0 2.53 6.35 1.54 1.49
Smp_126180.3 0 -0.43 3.15 -0.86 -6.29
Smp_126220.1 0 1.80 5.25 1.87 4.04
Smp_127790.1 0 -0.50 1.35 -1.97 -4.33
Smp_131300.1 0 1.18 2.14 -4.87 -2.56
Smp_132470.1 0 0.90 3.28 -5.62 -9.01
Smp_134100.1 0 0.70 4.69 0.40 -0.45
Smp_135010.1 0 0.82 3.18 -0.95 -2.30
Smp_136720.1 0 1.63 4.13 -5.84 -3.55
Smp_138070.1 0 2.41 6.98 -1.44 3.23
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_139170.1 0 2.45 4.33 0.78 0.06
Smp_139940.1 0 3.07 4.50 -0.39 -2.02
Smp_141800.1 0 -3.07 0.09 -3.82 -7.51
Smp_144350.1 0 2.33 4.53 0.32 -0.03
Smp_148110.1 0 1.60 3.38 -2.98 -3.24
Smp_152540.1 0 3.53 6.32 3.87 4.18
Smp_153650.1 0 -0.02 1.72 -2.93 -3.55
Smp_155430.1 0 1.80 5.37 3.71 3.43
Smp_156370.1 0 -1.21 3.29 0.78 0.34
Smp_156660.1 0 -0.02 3.03 0.95 -2.28
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159070.4 0 3.29 5.54 2.90 0.83
Smp_159800.1 0 0.00 6.34 0.00 0.00
Smp_163550.1 0 1.70 4.66 1.90 0.50
Smp_166530.1 0 0.50 3.97 -5.99 -5.99
Smp_171390.1 0 1.88 5.93 0.00 0.00
Smp_175290.1 0 2.94 5.17 0.92 0.51
Smp_175300.1 0 6.82 9.29 5.85 5.56
Smp_179740.1 0 1.00 3.85 0.39 0.86
Smp_184370.1 0 -1.11 0.66 -3.32 -4.28
Smp_188230.1 0 2.60 5.01 2.53 1.16
Smp_189980.1 0 1.62 9.93 -1.10 -1.10
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_198240.1 0 0.82 5.12 3.23 2.11
Smp_200520.1 0 2.06 7.02 3.71 4.93
Smp_200830.1 0 0.51 2.30 -3.02 -5.44
Smp_200880.1 0 1.47 2.90 -4.50 -6.34
Smp_202420.1 0 -0.06 2.13 -4.70 -1.89
Smp_205050.1 0 0.07 1.73 -5.83 -8.52
Smp_205310.1 0 -0.53 4.40 -2.57 1.66
Smp_205590.1 0 0.00 6.18 0.00 0.00
Smp_206270.1 0 1.06 4.27 1.21 -0.69
Smp_212600.1 0 2.41 4.90 2.41 2.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_138080.1 SmLINC00192-IBu 0.92 9.66e-07 5.21e-05
Smp_138080.1 SmLINC00194-IBu 0.90 3.35e-06 1.00e-04
Smp_138080.1 SmLINC00195-IBu 0.93 3.74e-07 2.68e-05
Smp_138080.1 SmLINC00372-IBu 0.90 4.24e-06 1.00e-04
Smp_138080.1 SmLINC01077-IBu 0.92 6.30e-07 3.86e-05
Smp_138080.1 SmLINC01369-IBu 0.96 5.76e-09 1.58e-06
Smp_138080.1 SmLINC01499-IBu 0.94 1.06e-07 1.13e-05
Smp_138080.1 SmLINC02974-IBu 0.96 1.14e-08 2.50e-06
Smp_138080.1 SmLINC03924-IBu 0.92 5.85e-07 3.66e-05
Smp_138080.1 SmLINC04077-IBu 0.90 3.19e-06 1.00e-04
Smp_138080.1 SmLINC04219-IBu 0.98 6.77e-11 9.12e-08
Smp_138080.1 SmLINC04430-IBu 0.96 3.71e-09 1.18e-06
Smp_138080.1 SmLINC05301-IBu 0.93 2.64e-07 2.11e-05
Smp_138080.1 SmLINC05559-IBu 0.94 9.08e-08 1.01e-05
Smp_138080.1 SmLINC06039-IBu 0.93 3.34e-07 2.48e-05
Smp_138080.1 SmLINC06183-IBu 0.96 1.30e-08 2.72e-06
Smp_138080.1 SmLINC06184-IBu 0.94 1.62e-07 1.50e-05
Smp_138080.1 SmLINC06836-IBu 0.90 4.51e-06 1.00e-04
Smp_138080.1 SmLINC06953-IBu 0.93 3.43e-07 2.53e-05
Smp_138080.1 Smp_010110.3 0.93 1.95e-07 1.71e-05
Smp_138080.1 Smp_010140.2 0.97 4.00e-10 2.83e-07
Smp_138080.1 Smp_014660.1 0.94 6.54e-08 8.11e-06
Smp_138080.1 Smp_016750.1 0.94 8.72e-08 9.85e-06
Smp_138080.1 Smp_029940.1 0.92 6.11e-07 3.78e-05
Smp_138080.1 Smp_035640.1 0.93 2.74e-07 2.16e-05
Smp_138080.1 Smp_036470.1 0.98 2.91e-12 1.28e-08
Smp_138080.1 Smp_038960.1 0.95 4.54e-08 6.33e-06
Smp_042090.3 Smp_138080.1 0.90 2.98e-06 1.00e-04
Smp_048520.3 Smp_138080.1 0.98 2.64e-12 1.20e-08
Smp_055420.1 Smp_138080.1 0.98 1.83e-11 3.99e-08
Smp_138080.1 Smp_060190.4 0.94 7.12e-08 8.58e-06
Smp_075220.3 Smp_138080.1 0.91 1.60e-06 7.43e-05
Smp_138080.1 Smp_076040.2 0.90 4.21e-06 1.00e-04
Smp_138080.1 Smp_076650.1 0.91 1.33e-06 6.53e-05
Smp_138080.1 Smp_078010.1 0.94 1.58e-07 1.48e-05
Smp_084600.2 Smp_138080.1 0.91 2.09e-06 8.99e-05
Smp_138080.1 Smp_084940.1 0.94 7.82e-08 9.14e-06
Smp_138080.1 Smp_093790.1 0.91 2.08e-06 8.95e-05
Smp_098890.1 Smp_138080.1 0.90 4.76e-06 1.00e-04
Smp_106750.1 Smp_138080.1 0.90 3.37e-06 1.00e-04
Smp_138080.1 Smp_112520.1 0.92 6.41e-07 3.91e-05
Smp_138080.1 Smp_115510.1 0.94 1.63e-07 1.51e-05
Smp_138080.1 Smp_123920.1 0.98 1.47e-11 3.50e-08
Smp_126180.3 Smp_138080.1 0.95 1.78e-08 3.35e-06
Smp_138080.1 Smp_126220.1 0.97 1.70e-09 7.17e-07
Smp_127790.1 Smp_138080.1 0.95 2.01e-08 3.65e-06
Smp_138080.1 Smp_131300.1 0.92 5.82e-07 3.65e-05
Smp_138080.1 Smp_132470.1 0.96 1.35e-08 2.79e-06
Smp_138080.1 Smp_134100.1 0.99 2.10e-14 6.23e-10
Smp_138080.1 Smp_135010.1 0.96 4.71e-09 1.38e-06
Smp_138080.1 Smp_136720.1 0.94 7.33e-08 8.75e-06
Smp_138080.1 Smp_138070.1 0.97 4.97e-10 3.25e-07
Smp_138080.1 Smp_139170.1 0.94 1.24e-07 1.25e-05
Smp_138080.1 Smp_139940.1 0.90 3.81e-06 1.00e-04
Smp_138080.1 Smp_141800.1 0.93 3.28e-07 2.45e-05
Smp_138080.1 Smp_144350.1 0.93 2.48e-07 2.02e-05
Smp_138080.1 Smp_148110.1 0.92 8.10e-07 4.60e-05
Smp_138080.1 Smp_152540.1 0.91 1.42e-06 6.83e-05
Smp_138080.1 Smp_153650.1 0.93 2.53e-07 2.05e-05
Smp_138080.1 Smp_155430.1 0.93 2.35e-07 1.94e-05
Smp_138080.1 Smp_156370.1 0.91 1.81e-06 8.12e-05
Smp_138080.1 Smp_156660.1 0.95 3.50e-08 5.30e-06
Smp_138080.1 Smp_159070.3 0.90 2.96e-06 1.00e-04
Smp_138080.1 Smp_159070.4 0.90 4.57e-06 1.00e-04
Smp_138080.1 Smp_159800.1 0.94 8.56e-08 9.73e-06
Smp_138080.1 Smp_163550.1 0.96 2.96e-09 1.02e-06
Smp_166530.1 Smp_138080.1 0.98 4.64e-11 7.18e-08
Smp_138080.1 Smp_171390.1 0.96 6.00e-09 1.62e-06
Smp_138080.1 Smp_175290.1 0.93 4.31e-07 2.96e-05
Smp_138080.1 Smp_175300.1 0.90 3.65e-06 1.00e-04
Smp_138080.1 Smp_179740.1 0.95 1.78e-08 3.36e-06
Smp_138080.1 Smp_184370.1 0.90 2.76e-06 1.00e-04
Smp_138080.1 Smp_188230.1 0.90 2.57e-06 1.00e-04
Smp_138080.1 Smp_189980.1 0.96 2.41e-09 8.99e-07
Smp_138080.1 Smp_194060.1 0.90 2.75e-06 1.00e-04
Smp_138080.1 Smp_198240.1 0.91 2.00e-06 8.69e-05
Smp_200520.1 Smp_138080.1 0.95 2.47e-08 4.18e-06
Smp_200830.1 Smp_138080.1 0.96 1.43e-08 2.90e-06
Smp_138080.1 Smp_200880.1 0.93 3.21e-07 2.42e-05
Smp_138080.1 Smp_202420.1 0.91 1.50e-06 7.11e-05
Smp_205050.1 Smp_138080.1 0.90 3.37e-06 1.00e-04
Smp_138080.1 Smp_205310.1 0.94 1.39e-07 1.36e-05
Smp_138080.1 Smp_205590.1 0.99 9.10e-20 6.96e-14
Smp_138080.1 Smp_206270.1 0.91 1.46e-06 6.98e-05
Smp_138080.1 Smp_212600.1 0.92 7.38e-07 4.31e-05