Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_138070.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_138070.1 0 2.41 6.98 -1.44 3.23

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_138070.1 SmLINC00372-IBu 0.91 1.54e-06 6.99e-05
Smp_138070.1 SmLINC02026-IBu 0.83 9.60e-05 1.30e-03
Smp_138070.1 SmLINC04430-IBu 0.98 1.25e-10 1.23e-07
Smp_138070.1 SmLINC04947-IBu 0.89 7.29e-06 2.00e-04
Smp_138070.1 SmLINC05559-IBu 0.97 1.05e-09 4.89e-07
Smp_138070.1 SmLINC06700-IBu 0.87 2.02e-05 4.00e-04
Smp_138070.1 SmLINC06836-IBu 0.93 2.42e-07 1.89e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_042090.3 0 0.00 11.29 0.00 0.00
Smp_138070.1 0 2.41 6.98 -1.44 3.23
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 Smp_138070.1 0.99 1.03e-13 1.65e-09
Smp_042090.3 Smp_138070.1 0.93 2.46e-07 2.01e-05
Smp_138080.1 Smp_138070.1 0.97 4.97e-10 3.25e-07
Smp_159070.3 Smp_138070.1 0.91 2.22e-06 9.36e-05