Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_137980.1 Data

Correlation between Smp_137980.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_137980.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04481-IBu 0 4.43 2.49 6.85 2.74
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_137980.1 0 4.49 5.09 6.98 5.86

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_137980.1 SmLINC00477-IBu 0.88 1.49e-05 3.00e-04
Smp_137980.1 SmLINC00484-IBu 0.87 1.55e-05 3.00e-04
Smp_137980.1 SmLINC00548-IBu 0.81 2.00e-04 2.40e-03
Smp_137980.1 SmLINC00769-IBu 0.84 6.41e-05 1.00e-03
Smp_137980.1 SmLINC01066-IBu 0.85 4.22e-05 7.00e-04
Smp_137980.1 SmLINC01139-IBu 0.84 7.53e-05 1.10e-03
Smp_137980.1 SmLINC01171-IBu 0.82 1.00e-04 1.90e-03
Smp_137980.1 SmLINC01433-IBu 0.85 5.43e-05 9.00e-04
Smp_137980.1 SmLINC01435-IBu 0.82 1.00e-04 1.80e-03
Smp_137980.1 SmLINC01538-IBu 0.83 9.85e-05 1.30e-03
Smp_137980.1 SmLINC01733-IBu 0.81 2.00e-04 2.60e-03
Smp_137980.1 SmLINC01746-IBu 0.82 1.00e-04 1.90e-03
Smp_137980.1 SmLINC01822-IBu 0.86 3.73e-05 6.00e-04
Smp_137980.1 SmLINC02581-IBu 0.90 2.93e-06 1.00e-04
Smp_137980.1 SmLINC03236-IBu 0.80 2.00e-04 2.80e-03
Smp_137980.1 SmLINC03309-IBu 0.85 4.10e-05 7.00e-04
Smp_137980.1 SmLINC03542-IBu 0.86 3.85e-05 7.00e-04
Smp_137980.1 SmLINC03693-IBu 0.88 1.05e-05 2.00e-04
Smp_137980.1 SmLINC04054-IBu 0.90 2.88e-06 1.00e-04
Smp_137980.1 SmLINC04345-IBu 0.87 1.89e-05 4.00e-04
Smp_137980.1 SmLINC04432-IBu 0.83 1.00e-04 1.40e-03
Smp_137980.1 SmLINC04475-IBu 0.89 5.35e-06 1.00e-04
Smp_137980.1 SmLINC04481-IBu 0.85 5.11e-05 8.00e-04
Smp_137980.1 SmLINC04637-IBu 0.83 9.23e-05 1.30e-03
Smp_137980.1 SmLINC04663-IBu 0.86 3.89e-05 7.00e-04
Smp_137980.1 SmLINC04684-IBu 0.81 2.00e-04 2.40e-03
Smp_137980.1 SmLINC04747-IBu 0.88 1.32e-05 3.00e-04
Smp_137980.1 SmLINC04769-IBu 0.89 5.81e-06 1.00e-04
Smp_137980.1 SmLINC05009-IBu 0.92 6.69e-07 3.86e-05
Smp_137980.1 SmLINC05171-IBu 0.89 6.44e-06 1.00e-04
Smp_137980.1 SmLINC05258-IBu 0.82 1.00e-04 2.00e-03
Smp_137980.1 SmLINC05632-IBu 0.88 9.77e-06 2.00e-04
Smp_137980.1 SmLINC05990-IBu 0.89 5.18e-06 1.00e-04
Smp_137980.1 SmLINC06007-IBu 0.85 5.60e-05 9.00e-04
Smp_137980.1 SmLINC06010-IBu 0.90 3.28e-06 1.00e-04
Smp_137980.1 SmLINC06221-IBu 0.91 2.16e-06 8.88e-05
Smp_137980.1 SmLINC06418-IBu 0.81 2.00e-04 2.40e-03
Smp_137980.1 SmLINC06444-IBu 0.85 4.52e-05 7.00e-04
Smp_137980.1 SmLINC06449-IBu 0.89 7.43e-06 2.00e-04
Smp_137980.1 SmLINC06536-IBu 0.85 4.74e-05 8.00e-04
Smp_137980.1 SmLINC06538-IBu 0.80 2.00e-04 2.80e-03
Smp_137980.1 SmLINC06543-IBu 0.85 5.64e-05 9.00e-04

Correlation between Smp_137980.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_137980.1 0 4.49 5.09 6.98 5.86
Smp_141480.1 0 7.59 4.10 10.61 8.33
Smp_175020.1 0 5.88 8.81 11.73 9.58

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014780.1 Smp_137980.1 0.91 1.75e-06 7.92e-05
Smp_118560.1 Smp_137980.1 0.92 5.18e-07 3.37e-05
Smp_137980.1 Smp_141480.1 0.91 2.21e-06 9.33e-05
Smp_137980.1 Smp_175020.1 0.91 1.59e-06 7.43e-05