Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_137520.1 Data

Correlation between Smp_137520.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_137520.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_137520.1 0 -2.84 -5.66 -3.12 -4.79

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_137520.1 SmLINC04957-IBu 0.94 1.84e-07 1.56e-05
Smp_137520.1 SmLINC06890-IBu 0.97 5.39e-10 3.16e-07
Smp_137520.1 SmLINC06903-IBu 0.90 3.02e-06 1.00e-04

Correlation between Smp_137520.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_032980.1 0 -3.49 -10.60 -12.19 -12.01
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_055770.1 0 -5.16 -5.96 -12.28 -12.28
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_137520.1 0 -2.84 -5.66 -3.12 -4.79
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032980.1 Smp_137520.1 0.93 3.67e-07 2.65e-05
Smp_043670.2 Smp_137520.1 0.95 5.55e-08 7.25e-06
Smp_055770.1 Smp_137520.1 0.93 2.40e-07 1.98e-05
Smp_079970.1 Smp_137520.1 0.95 2.04e-08 3.69e-06
Smp_137520.1 Smp_152780.1 0.93 3.30e-07 2.46e-05
Smp_182890.1 Smp_137520.1 0.93 3.02e-07 2.31e-05
Smp_137520.1 Smp_186130.1 0.91 1.74e-06 7.89e-05
Smp_206200.1 Smp_137520.1 0.93 4.26e-07 2.94e-05