Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_137330.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_137330.1 0 -0.19 -0.00 -4.27 -3.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_137330.1 SmLINC00001-IBu -0.84 6.99e-05 1.00e-03
Smp_137330.1 SmLINC00004-IBu -0.88 1.42e-05 3.00e-04
Smp_137330.1 SmLINC00369-IBu -0.87 1.70e-05 3.00e-04
Smp_137330.1 SmLINC00525-IBu -0.88 1.48e-05 3.00e-04
Smp_137330.1 SmLINC00548-IBu -0.80 2.00e-04 3.10e-03
Smp_137330.1 SmLINC00633-IBu -0.84 8.82e-05 1.20e-03
Smp_137330.1 SmLINC01084-IBu -0.89 6.09e-06 1.00e-04
Smp_137330.1 SmLINC01122-IBu -0.84 8.37e-05 1.20e-03
Smp_137330.1 SmLINC01316-IBu 0.87 2.39e-05 5.00e-04
Smp_137330.1 SmLINC01431-IBu -0.90 3.46e-06 1.00e-04
Smp_137330.1 SmLINC01538-IBu -0.81 2.00e-04 2.60e-03
Smp_137330.1 SmLINC01569-IBu -0.82 1.00e-04 1.70e-03
Smp_137330.1 SmLINC02084-IBu -0.87 1.66e-05 3.00e-04
Smp_137330.1 SmLINC02394-IBu -0.84 7.47e-05 1.10e-03
Smp_137330.1 SmLINC02539-IBu -0.80 2.00e-04 2.80e-03
Smp_137330.1 SmLINC02546-IBu -0.85 5.71e-05 9.00e-04
Smp_137330.1 SmLINC02646-IBu 0.80 2.00e-04 2.80e-03
Smp_137330.1 SmLINC03927-IBu -0.83 1.00e-04 1.50e-03
Smp_137330.1 SmLINC04421-IBu -0.87 1.53e-05 3.00e-04
Smp_137330.1 SmLINC04423-IBu -0.85 5.65e-05 9.00e-04
Smp_137330.1 SmLINC04478-IBu -0.85 5.01e-05 8.00e-04
Smp_137330.1 SmLINC04521-IBu -0.84 6.39e-05 1.00e-03
Smp_137330.1 SmLINC05147-IBu -0.83 1.00e-04 1.40e-03
Smp_137330.1 SmLINC05289-IBu -0.85 4.74e-05 8.00e-04
Smp_137330.1 SmLINC05604-IBu -0.86 2.77e-05 5.00e-04
Smp_137330.1 SmLINC06024-IBu -0.91 1.43e-06 6.64e-05
Smp_137330.1 SmLINC06145-IBu -0.83 9.36e-05 1.30e-03
Smp_137330.1 SmLINC06489-IBu 0.85 5.74e-05 9.00e-04
Smp_137330.1 SmLINC06490-IBu 0.95 4.38e-08 5.82e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_137330.1 0 -0.19 -0.00 -4.27 -3.94
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_184180.1 0 -0.01 -0.17 -13.99 -13.99
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_205060.1 0 0.36 1.28 -6.63 -10.51
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033260.1 Smp_137330.1 -0.92 1.08e-06 5.64e-05
Smp_038870.2 Smp_137330.1 -0.95 2.33e-08 4.03e-06
Smp_056460.1 Smp_137330.1 -0.91 1.77e-06 7.99e-05
Smp_137330.1 Smp_079420.1 -0.90 2.77e-06 1.00e-04
Smp_159070.2 Smp_137330.1 -0.90 3.80e-06 1.00e-04
Smp_137330.1 Smp_168800.1 0.93 4.41e-07 3.01e-05
Smp_137330.1 Smp_184180.1 0.91 1.75e-06 7.93e-05
Smp_194860.1 Smp_137330.1 -0.91 2.46e-06 1.00e-04
Smp_205060.1 Smp_137330.1 0.93 3.35e-07 2.49e-05
Smp_212510.1 Smp_137330.1 0.95 1.66e-08 3.20e-06