Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_137130.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06205-IBu 0 0.00 7.73 9.47 9.16
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_137130.1 0 0.81 3.24 4.81 4.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_137130.1 SmLINC00171-IBu 0.80 2.00e-04 2.80e-03
Smp_137130.1 SmLINC00369-IBu 0.87 2.03e-05 4.00e-04
Smp_137130.1 SmLINC00477-IBu 0.84 7.60e-05 1.10e-03
Smp_137130.1 SmLINC00484-IBu 0.83 1.00e-04 1.50e-03
Smp_137130.1 SmLINC00548-IBu 0.90 4.16e-06 1.00e-04
Smp_137130.1 SmLINC00554-IBu -0.80 2.00e-04 2.70e-03
Smp_137130.1 SmLINC00556-IBu -0.84 8.81e-05 1.20e-03
Smp_137130.1 SmLINC00633-IBu 0.86 2.97e-05 5.00e-04
Smp_137130.1 SmLINC00769-IBu 0.81 1.00e-04 2.20e-03
Smp_137130.1 SmLINC01066-IBu 0.84 8.85e-05 1.20e-03
Smp_137130.1 SmLINC01084-IBu 0.84 7.39e-05 1.10e-03
Smp_137130.1 SmLINC01122-IBu 0.86 2.51e-05 5.00e-04
Smp_137130.1 SmLINC01139-IBu 0.86 3.04e-05 5.00e-04
Smp_137130.1 SmLINC01231-IBu 0.82 1.00e-04 2.00e-03
Smp_137130.1 SmLINC01431-IBu 0.90 4.48e-06 1.00e-04
Smp_137130.1 SmLINC01433-IBu 0.80 2.00e-04 2.90e-03
Smp_137130.1 SmLINC01435-IBu 0.86 3.38e-05 6.00e-04
Smp_137130.1 SmLINC01538-IBu 0.90 2.63e-06 1.00e-04
Smp_137130.1 SmLINC01569-IBu 0.87 1.53e-05 3.00e-04
Smp_137130.1 SmLINC01733-IBu 0.91 1.56e-06 7.05e-05
Smp_137130.1 SmLINC01746-IBu 0.92 1.01e-06 5.20e-05
Smp_137130.1 SmLINC02084-IBu 0.87 2.03e-05 4.00e-04
Smp_137130.1 SmLINC02255-IBu -0.84 7.02e-05 1.00e-03
Smp_137130.1 SmLINC02546-IBu 0.88 1.02e-05 2.00e-04
Smp_137130.1 SmLINC02630-IBu -0.80 3.00e-04 3.30e-03
Smp_137130.1 SmLINC02657-IBu -0.86 3.73e-05 6.00e-04
Smp_137130.1 SmLINC03309-IBu 0.91 2.03e-06 8.49e-05
Smp_137130.1 SmLINC03542-IBu 0.81 2.00e-04 2.60e-03
Smp_137130.1 SmLINC03693-IBu 0.89 8.21e-06 2.00e-04
Smp_137130.1 SmLINC03849-IBu -0.80 3.00e-04 3.10e-03
Smp_137130.1 SmLINC03927-IBu 0.83 1.00e-04 1.50e-03
Smp_137130.1 SmLINC04345-IBu 0.81 2.00e-04 2.50e-03
Smp_137130.1 SmLINC04432-IBu 0.93 3.97e-07 2.67e-05
Smp_137130.1 SmLINC04475-IBu 0.93 3.49e-07 2.45e-05
Smp_137130.1 SmLINC04478-IBu 0.83 1.00e-04 1.50e-03
Smp_137130.1 SmLINC04521-IBu 0.85 4.12e-05 7.00e-04
Smp_137130.1 SmLINC04637-IBu 0.80 3.00e-04 3.30e-03
Smp_137130.1 SmLINC04663-IBu 0.84 6.72e-05 1.00e-03
Smp_137130.1 SmLINC04684-IBu 0.85 4.10e-05 7.00e-04
Smp_137130.1 SmLINC04769-IBu 0.80 3.00e-04 3.30e-03
Smp_137130.1 SmLINC05147-IBu 0.88 1.25e-05 3.00e-04
Smp_137130.1 SmLINC05171-IBu 0.81 2.00e-04 2.40e-03
Smp_137130.1 SmLINC05258-IBu 0.86 2.57e-05 5.00e-04
Smp_137130.1 SmLINC05274-IBu -0.81 2.00e-04 2.50e-03
Smp_137130.1 SmLINC05284-IBu -0.80 2.00e-04 3.00e-03
Smp_137130.1 SmLINC05870-IBu 0.84 8.04e-05 1.20e-03
Smp_137130.1 SmLINC06010-IBu 0.86 2.78e-05 5.00e-04
Smp_137130.1 SmLINC06205-IBu 0.85 5.50e-05 9.00e-04
Smp_137130.1 SmLINC06221-IBu 0.90 2.91e-06 1.00e-04
Smp_137130.1 SmLINC06418-IBu 0.86 3.13e-05 6.00e-04
Smp_137130.1 SmLINC06444-IBu 0.88 1.10e-05 2.00e-04
Smp_137130.1 SmLINC06449-IBu 0.90 4.37e-06 1.00e-04
Smp_137130.1 SmLINC06535-IBu -0.83 9.70e-05 1.30e-03
Smp_137130.1 SmLINC06536-IBu 0.84 6.37e-05 1.00e-03
Smp_137130.1 SmLINC06543-IBu 0.88 1.01e-05 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_137130.1 0 0.81 3.24 4.81 4.94
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_205270.1 0 0.71 -0.40 10.02 9.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_137130.1 Smp_034980.2 0.90 4.05e-06 1.00e-04
Smp_137130.1 Smp_045200.1 0.92 7.07e-07 4.18e-05
Smp_137130.1 Smp_051210.3 0.93 3.96e-07 2.79e-05
Smp_137130.1 Smp_055340.2 0.94 1.45e-07 1.39e-05
Smp_137130.1 Smp_145400.1 0.93 4.91e-07 3.24e-05
Smp_150980.2 Smp_137130.1 0.90 4.02e-06 1.00e-04
Smp_172480.1 Smp_137130.1 0.91 1.36e-06 6.63e-05
Smp_137130.1 Smp_205270.1 0.90 4.26e-06 1.00e-04