Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_136850.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC04250-IBu 0 6.51 7.95 8.09 9.23
Smp_136850.2 0 -2.73 0.98 1.99 2.74

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_136850.2 SmLINC00554-IBu -0.82 1.00e-04 2.10e-03
Smp_136850.2 SmLINC02657-IBu -0.82 1.00e-04 2.00e-03
Smp_136850.2 SmLINC04250-IBu 0.80 3.00e-04 3.40e-03