Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_136840.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_136840.1 0 1.29 1.39 -6.10 -6.10

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_136840.1 SmLINC01316-IBu 0.87 1.89e-05 4.00e-04
Smp_136840.1 SmLINC01429-IBu 0.83 1.00e-04 1.60e-03
Smp_136840.1 SmLINC01979-IBu 0.92 1.16e-06 5.73e-05
Smp_136840.1 SmLINC02646-IBu 0.89 5.39e-06 1.00e-04
Smp_136840.1 SmLINC03111-IBu 0.87 2.32e-05 4.00e-04
Smp_136840.1 SmLINC03395-IBu 0.89 8.13e-06 2.00e-04
Smp_136840.1 SmLINC03443-IBu 0.85 4.30e-05 7.00e-04
Smp_136840.1 SmLINC04074-IBu 0.92 6.10e-07 3.62e-05
Smp_136840.1 SmLINC06024-IBu -0.82 1.00e-04 2.10e-03
Smp_136840.1 SmLINC06490-IBu 0.82 1.00e-04 1.80e-03
Smp_136840.1 SmLINC06646-IBu 0.90 4.33e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_136840.1 0 1.29 1.39 -6.10 -6.10
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_193990.1 0 2.54 2.04 -11.18 -11.18

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_136840.1 Smp_059340.3 0.90 3.25e-06 1.00e-04
Smp_168800.1 Smp_136840.1 0.91 1.21e-06 6.12e-05
Smp_193990.1 Smp_136840.1 0.91 1.98e-06 8.65e-05