Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_136240.9 Data

Correlation between Smp_136240.9 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_136240.9 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
Smp_136240.9 0 -3.09 -3.16 -4.37 -6.52

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_136240.9 SmLINC02678-IBu 0.94 1.40e-07 1.30e-05
Smp_136240.9 SmLINC04957-IBu 0.88 1.20e-05 3.00e-04
Smp_136240.9 SmLINC05989-IBu 0.80 3.00e-04 3.10e-03
Smp_136240.9 SmLINC06128-IBu 0.88 1.03e-05 2.00e-04
Smp_136240.9 SmLINC06890-IBu 0.81 1.00e-04 2.30e-03

Correlation between Smp_136240.9 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_032980.1 0 -3.49 -10.60 -12.19 -12.01
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_136240.9 0 -3.09 -3.16 -4.37 -6.52
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_167680.1 0 -1.95 -2.65 -4.96 -10.61
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032980.1 Smp_136240.9 0.92 1.06e-06 5.56e-05
Smp_136240.9 Smp_079970.1 0.91 2.32e-06 9.68e-05
Smp_136240.9 Smp_134410.1 0.90 3.02e-06 1.00e-04
Smp_136240.9 Smp_152780.1 0.92 8.11e-07 4.60e-05
Smp_136240.9 Smp_167680.1 0.92 9.17e-07 5.02e-05
Smp_136240.9 Smp_169190.1 0.90 2.55e-06 1.00e-04