Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_136240.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_136240.3 0 0.29 -2.67 -3.72 -4.15

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_136240.3 SmLINC00037-IBu 0.89 7.20e-06 2.00e-04
Smp_136240.3 SmLINC00133-IBu 0.91 2.17e-06 8.91e-05
Smp_136240.3 SmLINC00282-IBu 0.89 5.51e-06 1.00e-04
Smp_136240.3 SmLINC00893-IBu 0.83 1.00e-04 1.60e-03
Smp_136240.3 SmLINC01462-IBu 0.85 5.24e-05 8.00e-04
Smp_136240.3 SmLINC01486-IBu 0.89 6.99e-06 2.00e-04
Smp_136240.3 SmLINC01637-IBu 0.84 7.23e-05 1.10e-03
Smp_136240.3 SmLINC02038-IBu 0.86 2.55e-05 5.00e-04
Smp_136240.3 SmLINC03056-IBu 0.84 7.87e-05 1.10e-03
Smp_136240.3 SmLINC03362-IBu 0.85 5.11e-05 8.00e-04
Smp_136240.3 SmLINC03769-IBu 0.86 3.85e-05 7.00e-04
Smp_136240.3 SmLINC03848-IBu 0.87 2.08e-05 4.00e-04
Smp_136240.3 SmLINC03930-IBu 0.86 3.10e-05 6.00e-04
Smp_136240.3 SmLINC04075-IBu 0.91 2.25e-06 9.14e-05
Smp_136240.3 SmLINC04366-IBu 0.82 1.00e-04 1.90e-03
Smp_136240.3 SmLINC04940-IBu 0.84 8.41e-05 1.20e-03
Smp_136240.3 SmLINC05716-IBu 0.83 1.00e-04 1.60e-03
Smp_136240.3 SmLINC06210-IBu 0.80 2.00e-04 3.10e-03
Smp_136240.3 SmLINC06535-IBu 0.82 1.00e-04 1.90e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_009320.1 0 -0.45 -10.12 -7.98 -10.12
Smp_123000.1 0 0.49 -5.87 -12.08 -12.08
Smp_136240.3 0 0.29 -2.67 -3.72 -4.15
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009320.1 Smp_136240.3 0.93 3.05e-07 2.33e-05
Smp_136240.3 Smp_123000.1 0.95 5.80e-08 7.47e-06
Smp_185830.1 Smp_136240.3 0.90 3.70e-06 1.00e-04