Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_135250.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
Smp_135250.1 0 -4.50 -7.60 -5.52 -7.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_135250.1 SmLINC02039-IBu 0.85 4.42e-05 7.00e-04
Smp_135250.1 SmLINC02678-IBu 0.92 8.76e-07 4.67e-05
Smp_135250.1 SmLINC02888-IBu 0.86 3.17e-05 6.00e-04
Smp_135250.1 SmLINC04957-IBu 0.82 1.00e-04 1.90e-03
Smp_135250.1 SmLINC06128-IBu 0.88 1.05e-05 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_135250.1 0 -4.50 -7.60 -5.52 -7.87
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_018880.1 Smp_135250.1 0.95 2.26e-08 3.95e-06
Smp_135250.1 Smp_071380.2 0.92 6.99e-07 4.14e-05
Smp_102670.1 Smp_135250.1 0.98 6.25e-11 8.66e-08
Smp_135250.1 Smp_133770.1 0.99 8.65e-13 6.06e-09
Smp_134410.1 Smp_135250.1 0.91 1.32e-06 6.49e-05
Smp_152780.1 Smp_135250.1 0.91 2.14e-06 9.13e-05
Smp_135250.1 Smp_153240.1 0.98 2.49e-12 1.16e-08
Smp_169190.1 Smp_135250.1 0.98 1.16e-10 1.28e-07
Smp_178240.1 Smp_135250.1 0.96 4.32e-09 1.31e-06
Smp_185360.1 Smp_135250.1 0.92 5.50e-07 3.51e-05