Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_135180.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01242-IBu 0 8.59 8.04 9.02 10.28
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
Smp_135180.1 0 -2.02 -1.68 -4.72 -7.04

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_135180.1 SmLINC00004-IBu -0.80 2.00e-04 3.00e-03
Smp_135180.1 SmLINC00369-IBu -0.80 3.00e-04 3.10e-03
Smp_135180.1 SmLINC00376-IBu -0.88 9.21e-06 2.00e-04
Smp_135180.1 SmLINC01171-IBu -0.81 1.00e-04 2.20e-03
Smp_135180.1 SmLINC01242-IBu -0.80 3.00e-04 3.10e-03
Smp_135180.1 SmLINC01431-IBu -0.81 2.00e-04 2.30e-03
Smp_135180.1 SmLINC02630-IBu 0.80 2.00e-04 3.00e-03
Smp_135180.1 SmLINC02678-IBu 0.83 1.00e-04 1.40e-03
Smp_135180.1 SmLINC04421-IBu -0.83 9.75e-05 1.30e-03
Smp_135180.1 SmLINC04423-IBu -0.80 2.00e-04 3.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_135180.1 0 -2.02 -1.68 -4.72 -7.04
Smp_154010.1 0 -1.98 -1.23 -7.66 -10.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_135180.1 Smp_154010.1 0.92 1.01e-06 5.39e-05