Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_134620.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_134620.1 0 0.64 3.07 4.84 5.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_134620.1 SmLINC00001-IBu 0.81 2.00e-04 2.50e-03
Smp_134620.1 SmLINC00266-IBu 0.86 3.36e-05 6.00e-04
Smp_134620.1 SmLINC00369-IBu 0.90 2.62e-06 1.00e-04
Smp_134620.1 SmLINC00525-IBu 0.81 1.00e-04 2.20e-03
Smp_134620.1 SmLINC00556-IBu -0.80 2.00e-04 2.90e-03
Smp_134620.1 SmLINC00633-IBu 0.84 6.57e-05 1.00e-03
Smp_134620.1 SmLINC01084-IBu 0.85 3.97e-05 7.00e-04
Smp_134620.1 SmLINC01122-IBu 0.81 1.00e-04 2.20e-03
Smp_134620.1 SmLINC01431-IBu 0.85 3.99e-05 7.00e-04
Smp_134620.1 SmLINC01432-IBu 0.90 3.88e-06 1.00e-04
Smp_134620.1 SmLINC01433-IBu 0.81 1.00e-04 2.20e-03
Smp_134620.1 SmLINC01435-IBu 0.83 9.12e-05 1.30e-03
Smp_134620.1 SmLINC01569-IBu 0.81 1.00e-04 2.20e-03
Smp_134620.1 SmLINC02084-IBu 0.90 4.55e-06 1.00e-04
Smp_134620.1 SmLINC02255-IBu -0.84 6.56e-05 1.00e-03
Smp_134620.1 SmLINC02394-IBu 0.80 3.00e-04 3.10e-03
Smp_134620.1 SmLINC02630-IBu -0.83 1.00e-04 1.50e-03
Smp_134620.1 SmLINC02657-IBu -0.81 2.00e-04 2.30e-03
Smp_134620.1 SmLINC03108-IBu 0.86 2.57e-05 5.00e-04
Smp_134620.1 SmLINC03693-IBu 0.84 6.45e-05 1.00e-03
Smp_134620.1 SmLINC03849-IBu -0.81 1.00e-04 2.20e-03
Smp_134620.1 SmLINC03927-IBu 0.85 5.65e-05 9.00e-04
Smp_134620.1 SmLINC04421-IBu 0.90 3.14e-06 1.00e-04
Smp_134620.1 SmLINC04478-IBu 0.80 2.00e-04 3.00e-03
Smp_134620.1 SmLINC04521-IBu 0.86 3.23e-05 6.00e-04
Smp_134620.1 SmLINC04759-IBu 0.81 2.00e-04 2.60e-03
Smp_134620.1 SmLINC05147-IBu 0.87 2.00e-05 4.00e-04
Smp_134620.1 SmLINC05258-IBu 0.80 2.00e-04 2.70e-03
Smp_134620.1 SmLINC05274-IBu -0.82 1.00e-04 2.00e-03
Smp_134620.1 SmLINC05284-IBu -0.82 1.00e-04 2.00e-03
Smp_134620.1 SmLINC05289-IBu 0.85 4.11e-05 7.00e-04
Smp_134620.1 SmLINC05604-IBu 0.86 3.03e-05 5.00e-04
Smp_134620.1 SmLINC06024-IBu 0.80 2.00e-04 2.80e-03
Smp_134620.1 SmLINC06145-IBu 0.88 1.47e-05 3.00e-04
Smp_134620.1 SmLINC06221-IBu 0.84 7.94e-05 1.10e-03
Smp_134620.1 SmLINC06535-IBu -0.81 1.00e-04 2.20e-03
Smp_134620.1 SmLINC06543-IBu 0.86 3.08e-05 6.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_134620.1 0 0.64 3.07 4.84 5.32
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194860.1 0 3.09 7.72 14.07 14.58

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_134620.1 Smp_123550.1 0.92 5.57e-07 3.54e-05
Smp_134620.1 Smp_151120.1 0.90 3.15e-06 1.00e-04
Smp_134620.1 Smp_156930.1 0.93 3.30e-07 2.46e-05
Smp_134620.1 Smp_166860.1 0.90 3.48e-06 1.00e-04
Smp_134620.1 Smp_172960.1 0.91 1.93e-06 8.51e-05
Smp_194860.1 Smp_134620.1 0.92 7.25e-07 4.25e-05