Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_134410.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_134410.1 SmLINC02255-IBu 0.83 1.00e-04 1.40e-03
Smp_134410.1 SmLINC02657-IBu 0.83 1.00e-04 1.50e-03
Smp_134410.1 SmLINC02678-IBu 0.86 3.06e-05 5.00e-04
Smp_134410.1 SmLINC02888-IBu 0.81 1.00e-04 2.20e-03
Smp_134410.1 SmLINC03769-IBu 0.81 1.00e-04 2.30e-03
Smp_134410.1 SmLINC04957-IBu 0.89 7.36e-06 2.00e-04
Smp_134410.1 SmLINC05989-IBu 0.91 1.95e-06 8.25e-05
Smp_134410.1 SmLINC06128-IBu 0.97 1.21e-09 5.35e-07
Smp_134410.1 SmLINC06890-IBu 0.83 1.00e-04 1.40e-03
Smp_134410.1 SmLINC06903-IBu 0.89 8.41e-06 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00565-IBu 0 -1.33 -5.82 -10.51 -4.87
SmLINC00998-IBu 0 -1.77 -2.82 -9.23 -9.23
SmLINC01234-IBu 0 -1.15 -2.33 -5.84 -5.11
SmLINC05095-IBu 0 -2.89 -9.14 -9.14 -9.14
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06240-IBu 0 -1.33 -10.34 -6.03 -6.09
SmLINC06405-IBu 0 -1.11 -2.49 -5.22 -6.11
Smp_002510.1 0 -3.00 -2.99 -4.71 -4.29
Smp_002930.1 0 -1.91 -4.36 -9.53 -9.53
Smp_003770.1 0 -2.73 -3.76 -4.30 -3.65
Smp_005860.1 0 -1.88 -5.14 -8.12 -7.71
Smp_006560.1 0 -3.55 -6.46 -6.31 -5.44
Smp_009650.1 0 -2.22 -4.12 -4.36 -3.86
Smp_014400.3 0 -1.41 -3.60 -7.89 -6.71
Smp_014400.5 0 -2.15 -4.06 -6.32 -9.42
Smp_016730.1 0 -3.42 -4.55 -5.13 -5.31
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_019750.2 0 -2.70 -5.17 -4.10 -4.19
Smp_021730.1 0 -2.52 -3.78 -4.00 -3.90
Smp_022430.1 0 -3.19 -4.81 -4.61 -4.50
Smp_028990.2 0 -2.03 -4.85 -4.73 -6.76
Smp_030500.1 0 -2.77 -6.42 -6.74 -6.44
Smp_032980.1 0 -3.49 -10.60 -12.19 -12.01
Smp_033400.1 0 -2.69 -7.71 -5.07 -4.27
Smp_033610.1 0 -2.04 -4.32 -5.07 -4.63
Smp_034550.1 0 -2.91 -5.29 -2.60 -4.93
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_035270.2 0 -2.51 -3.90 -3.56 -3.15
Smp_036250.1 0 -3.24 -3.82 -4.15 -3.72
Smp_038100.1 0 -2.11 -3.55 -4.08 -3.42
Smp_038530.1 0 -2.20 -4.62 -4.98 -6.68
Smp_042160.1 0 -2.29 -5.11 -4.28 -4.75
Smp_042160.2 0 -1.15 -4.96 -5.11 -6.09
Smp_050830.1 0 -1.69 -2.62 -4.49 -4.19
Smp_051230.3 0 -1.49 -4.66 -6.27 -4.15
Smp_052060.1 0 -2.31 -3.14 -4.09 -3.50
Smp_055210.1 0 -1.70 -3.76 -4.03 -3.39
Smp_055770.1 0 -5.16 -5.96 -12.28 -12.28
Smp_057060.1 0 -3.71 -5.93 -6.06 -6.08
Smp_057790.1 0 -3.82 -7.29 -4.86 -7.43
Smp_061870.1 0 -2.53 -4.47 -5.29 -5.38
Smp_063090.1 0 -2.16 -4.16 -3.57 -3.93
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_071390.1 0 -3.12 -4.67 -2.84 -3.82
Smp_074570.1 0 -1.85 -4.23 -8.15 -8.27
Smp_076010.1 0 -2.03 -5.17 -3.81 -3.82
Smp_079220.1 0 -2.48 -4.55 -6.52 -5.99
Smp_079920.1 0 -2.43 -3.90 -3.20 -3.57
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_083720.1 0 -2.37 -5.50 -6.31 -5.77
Smp_092320.1 0 -1.82 -3.08 -5.42 -5.28
Smp_097750.1 0 -1.63 -3.99 -4.48 -3.56
Smp_099420.1 0 -2.79 -4.14 -4.04 -2.98
Smp_099670.1 0 -3.51 -4.19 -5.26 -6.78
Smp_099680.1 0 -3.17 -4.14 -4.93 -7.18
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_108050.1 0 -2.06 -3.07 -8.81 -9.10
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_110400.3 0 -1.47 -2.30 -8.95 -9.88
Smp_114910.1 0 -3.08 -7.52 -7.91 -7.70
Smp_120920.3 0 -1.87 -3.40 -3.67 -4.06
Smp_125090.1 0 -1.49 -2.90 -8.82 -8.63
Smp_133310.1 0 -1.74 -4.20 -4.35 -4.73
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_135250.1 0 -4.50 -7.60 -5.52 -7.87
Smp_136240.9 0 -3.09 -3.16 -4.37 -6.52
Smp_145340.1 0 -2.62 -9.51 -6.28 -7.06
Smp_145710.1 0 -1.79 -2.79 -7.90 -7.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_152260.1 0 -3.17 -4.39 -4.03 -4.71
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_153600.1 0 -2.66 -5.24 -5.88 -4.89
Smp_154020.1 0 -1.89 -2.51 -3.88 -5.45
Smp_154370.1 0 -2.82 -7.17 -3.52 -2.90
Smp_155890.1 0 -3.01 -4.45 -2.70 -3.71
Smp_157310.1 0 -3.02 -6.78 -4.07 -5.91
Smp_159190.1 0 -3.70 -3.60 -3.46 -3.88
Smp_162370.1 0 -1.45 -4.56 -9.04 -5.93
Smp_166950.1 0 -1.86 -2.33 -5.56 -4.94
Smp_168380.1 0 -1.89 -2.82 -9.66 -9.66
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178530.1 0 -1.33 -2.48 -5.11 -6.02
Smp_179640.1 0 -2.62 -9.51 -6.28 -7.06
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_182910.1 0 -1.24 -2.03 -6.37 -6.64
Smp_183420.1 0 -2.62 -9.51 -6.28 -7.06
Smp_184750.1 0 -1.93 -3.13 -4.74 -4.46
Smp_185180.1 0 -1.60 -2.75 -5.44 -6.67
Smp_185220.1 0 -1.31 -3.59 -4.11 -4.96
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_187350.1 0 -1.35 -2.38 -8.77 -9.63
Smp_194770.1 0 -2.35 -7.85 -7.77 -7.92
Smp_195140.1 0 -1.78 -5.21 -6.28 -8.26
Smp_195160.1 0 -1.78 -3.62 -7.03 -7.47
Smp_197110.1 0 -1.94 -2.50 -4.24 -4.44
Smp_198950.1 0 -0.98 -2.10 -5.57 -7.76
Smp_204770.1 0 -2.64 -6.46 -5.44 -5.13
Smp_205900.1 0 -3.56 -6.12 -5.80 -6.36
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70
Smp_214150.1 0 -3.99 -7.32 -3.18 -5.90

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_134410.1 SmLINC00565-IBu 0.91 2.07e-06 8.92e-05
Smp_134410.1 SmLINC00998-IBu 0.96 5.88e-09 1.60e-06
Smp_134410.1 SmLINC01234-IBu 0.91 1.82e-06 8.16e-05
Smp_134410.1 SmLINC05095-IBu 0.91 1.35e-06 6.61e-05
Smp_134410.1 SmLINC05989-IBu 0.91 1.95e-06 8.54e-05
Smp_134410.1 SmLINC06128-IBu 0.97 1.21e-09 5.77e-07
Smp_134410.1 SmLINC06240-IBu 0.93 2.20e-07 1.86e-05
Smp_134410.1 SmLINC06405-IBu 0.91 2.44e-06 1.00e-04
Smp_134410.1 Smp_002510.1 0.91 1.46e-06 6.96e-05
Smp_134410.1 Smp_002930.1 0.91 1.55e-06 7.29e-05
Smp_003770.1 Smp_134410.1 0.93 2.34e-07 1.94e-05
Smp_005860.1 Smp_134410.1 0.93 3.77e-07 2.70e-05
Smp_134410.1 Smp_006560.1 0.93 2.75e-07 2.17e-05
Smp_134410.1 Smp_009650.1 0.90 3.21e-06 1.00e-04
Smp_014400.3 Smp_134410.1 0.90 3.34e-06 1.00e-04
Smp_014400.5 Smp_134410.1 0.97 1.94e-10 1.78e-07
Smp_134410.1 Smp_016730.1 0.90 4.04e-06 1.00e-04
Smp_134410.1 Smp_018880.1 0.97 3.71e-10 2.70e-07
Smp_134410.1 Smp_019750.2 0.97 1.03e-09 5.19e-07
Smp_134410.1 Smp_021730.1 0.94 1.17e-07 1.20e-05
Smp_134410.1 Smp_022430.1 0.93 3.73e-07 2.68e-05
Smp_134410.1 Smp_028990.2 0.91 2.49e-06 1.00e-04
Smp_030500.1 Smp_134410.1 0.97 1.79e-10 1.69e-07
Smp_032980.1 Smp_134410.1 0.91 1.65e-06 7.61e-05
Smp_033400.1 Smp_134410.1 0.95 3.23e-08 5.03e-06
Smp_134410.1 Smp_033610.1 0.95 2.59e-08 4.33e-06
Smp_034550.1 Smp_134410.1 0.92 5.27e-07 3.40e-05
Smp_034940.3 Smp_134410.1 0.94 1.34e-07 1.32e-05
Smp_134410.1 Smp_035090.2 0.94 8.93e-08 1.00e-05
Smp_035270.2 Smp_134410.1 0.94 9.47e-08 1.04e-05
Smp_036250.1 Smp_134410.1 0.94 1.83e-07 1.63e-05
Smp_134410.1 Smp_038100.1 0.97 2.28e-10 1.97e-07
Smp_134410.1 Smp_038530.1 0.94 1.41e-07 1.37e-05
Smp_042160.1 Smp_134410.1 0.93 2.99e-07 2.30e-05
Smp_042160.2 Smp_134410.1 0.91 1.81e-06 8.13e-05
Smp_134410.1 Smp_050830.1 0.93 4.94e-07 3.26e-05
Smp_134410.1 Smp_051230.3 0.95 2.97e-08 4.74e-06
Smp_134410.1 Smp_052060.1 0.95 3.25e-08 5.04e-06
Smp_055210.1 Smp_134410.1 0.95 4.74e-08 6.52e-06
Smp_055770.1 Smp_134410.1 0.91 2.41e-06 9.93e-05
Smp_134410.1 Smp_057060.1 0.95 5.57e-08 7.27e-06
Smp_134410.1 Smp_057790.1 0.95 3.75e-08 5.56e-06
Smp_061870.1 Smp_134410.1 0.97 1.16e-09 5.60e-07
Smp_063090.1 Smp_134410.1 0.97 1.24e-09 5.86e-07
Smp_134410.1 Smp_071380.2 0.94 1.51e-07 1.44e-05
Smp_134410.1 Smp_071390.1 0.91 2.48e-06 1.00e-04
Smp_074570.1 Smp_134410.1 0.92 6.49e-07 3.94e-05
Smp_076010.1 Smp_134410.1 0.91 2.21e-06 9.33e-05
Smp_134410.1 Smp_079220.1 0.98 2.68e-11 5.10e-08
Smp_134410.1 Smp_079920.1 0.95 1.49e-08 2.98e-06
Smp_134410.1 Smp_079970.1 0.92 5.64e-07 3.57e-05
Smp_083720.1 Smp_134410.1 0.98 9.31e-11 1.11e-07
Smp_092320.1 Smp_134410.1 0.96 4.13e-09 1.27e-06
Smp_097750.1 Smp_134410.1 0.93 5.02e-07 3.29e-05
Smp_099420.1 Smp_134410.1 0.92 5.96e-07 3.71e-05
Smp_134410.1 Smp_099670.1 0.96 1.05e-08 2.36e-06
Smp_134410.1 Smp_099680.1 0.91 2.34e-06 9.72e-05
Smp_102670.1 Smp_134410.1 0.95 2.00e-08 3.63e-06
Smp_106390.1 Smp_134410.1 0.92 1.08e-06 5.63e-05
Smp_134410.1 Smp_108050.1 0.94 1.52e-07 1.44e-05
Smp_109240.1 Smp_134410.1 0.90 2.54e-06 1.00e-04
Smp_110400.3 Smp_134410.1 0.93 4.56e-07 3.08e-05
Smp_134410.1 Smp_114910.1 0.94 7.17e-08 8.63e-06
Smp_134410.1 Smp_120920.3 0.92 8.00e-07 4.56e-05
Smp_125090.1 Smp_134410.1 0.93 2.92e-07 2.26e-05
Smp_133310.1 Smp_134410.1 0.95 4.87e-08 6.63e-06
Smp_134410.1 Smp_133770.1 0.90 3.22e-06 1.00e-04
Smp_134410.1 Smp_135250.1 0.91 1.32e-06 6.49e-05
Smp_136240.9 Smp_134410.1 0.90 3.02e-06 1.00e-04
Smp_134410.1 Smp_145340.1 0.95 3.90e-08 5.71e-06
Smp_145710.1 Smp_134410.1 0.95 1.51e-08 3.01e-06
Smp_145810.2 Smp_134410.1 0.90 3.34e-06 1.00e-04
Smp_149670.1 Smp_134410.1 0.96 4.87e-09 1.42e-06
Smp_152260.1 Smp_134410.1 0.95 5.54e-08 7.24e-06
Smp_134410.1 Smp_152780.1 0.94 1.88e-07 1.67e-05
Smp_134410.1 Smp_153240.1 0.90 3.67e-06 1.00e-04
Smp_134410.1 Smp_153600.1 0.94 1.70e-07 1.56e-05
Smp_154020.1 Smp_134410.1 0.96 5.52e-09 1.54e-06
Smp_154370.1 Smp_134410.1 0.95 4.07e-08 5.87e-06
Smp_155890.1 Smp_134410.1 0.92 5.71e-07 3.60e-05
Smp_134410.1 Smp_157310.1 0.94 1.52e-07 1.44e-05
Smp_134410.1 Smp_159190.1 0.91 1.47e-06 7.00e-05
Smp_134410.1 Smp_162370.1 0.94 1.74e-07 1.58e-05
Smp_166950.1 Smp_134410.1 0.94 9.76e-08 1.06e-05
Smp_168380.1 Smp_134410.1 0.92 9.84e-07 5.27e-05
Smp_134410.1 Smp_169190.1 0.96 1.25e-08 2.65e-06
Smp_134410.1 Smp_178530.1 0.90 2.88e-06 1.00e-04
Smp_134410.1 Smp_179640.1 0.95 3.90e-08 5.71e-06
Smp_134410.1 Smp_182770.1 0.91 1.28e-06 6.36e-05
Smp_134410.1 Smp_182910.1 0.91 1.35e-06 6.60e-05
Smp_134410.1 Smp_183420.1 0.95 3.90e-08 5.71e-06
Smp_134410.1 Smp_184750.1 0.98 1.64e-11 3.75e-08
Smp_185180.1 Smp_134410.1 0.92 5.62e-07 3.56e-05
Smp_185220.1 Smp_134410.1 0.95 4.26e-08 6.06e-06
Smp_134410.1 Smp_185360.1 0.90 2.90e-06 1.00e-04
Smp_134410.1 Smp_187350.1 0.92 6.13e-07 3.79e-05
Smp_134410.1 Smp_194770.1 0.97 1.41e-09 6.36e-07
Smp_195140.1 Smp_134410.1 0.93 2.88e-07 2.24e-05
Smp_134410.1 Smp_195160.1 0.98 4.11e-12 1.59e-08
Smp_134410.1 Smp_197110.1 0.96 1.26e-08 2.66e-06
Smp_198950.1 Smp_134410.1 0.90 4.54e-06 1.00e-04
Smp_134410.1 Smp_204770.1 0.95 3.28e-08 5.08e-06
Smp_134410.1 Smp_205900.1 0.90 3.28e-06 1.00e-04
Smp_206200.1 Smp_134410.1 0.90 4.68e-06 1.00e-04
Smp_134410.1 Smp_214150.1 0.92 1.17e-06 5.97e-05