Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_134340.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_134340.1 0 -3.89 -5.61 0.57 -0.52

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_134340.1 SmLINC00477-IBu 0.87 1.90e-05 4.00e-04
Smp_134340.1 SmLINC00484-IBu 0.87 2.15e-05 4.00e-04
Smp_134340.1 SmLINC00548-IBu 0.85 5.12e-05 8.00e-04
Smp_134340.1 SmLINC00633-IBu 0.82 1.00e-04 2.00e-03
Smp_134340.1 SmLINC00769-IBu 0.89 8.69e-06 2.00e-04
Smp_134340.1 SmLINC01066-IBu 0.80 2.00e-04 2.90e-03
Smp_134340.1 SmLINC01122-IBu 0.81 2.00e-04 2.50e-03
Smp_134340.1 SmLINC01139-IBu 0.90 2.96e-06 1.00e-04
Smp_134340.1 SmLINC01231-IBu 0.80 3.00e-04 3.40e-03
Smp_134340.1 SmLINC01435-IBu 0.85 4.41e-05 7.00e-04
Smp_134340.1 SmLINC01538-IBu 0.87 1.77e-05 4.00e-04
Smp_134340.1 SmLINC01569-IBu 0.83 1.00e-04 1.40e-03
Smp_134340.1 SmLINC01733-IBu 0.80 3.00e-04 3.20e-03
Smp_134340.1 SmLINC01746-IBu 0.83 1.00e-04 1.40e-03
Smp_134340.1 SmLINC01822-IBu 0.80 2.00e-04 3.10e-03
Smp_134340.1 SmLINC03309-IBu 0.87 1.62e-05 3.00e-04
Smp_134340.1 SmLINC03542-IBu 0.86 3.50e-05 6.00e-04
Smp_134340.1 SmLINC03693-IBu 0.82 1.00e-04 2.00e-03
Smp_134340.1 SmLINC04054-IBu 0.88 9.44e-06 2.00e-04
Smp_134340.1 SmLINC04345-IBu 0.91 2.12e-06 8.75e-05
Smp_134340.1 SmLINC04432-IBu 0.80 3.00e-04 3.30e-03
Smp_134340.1 SmLINC04478-IBu 0.80 3.00e-04 3.30e-03
Smp_134340.1 SmLINC04637-IBu 0.87 2.20e-05 4.00e-04
Smp_134340.1 SmLINC04663-IBu 0.93 4.75e-07 3.03e-05
Smp_134340.1 SmLINC04747-IBu 0.88 8.92e-06 2.00e-04
Smp_134340.1 SmLINC04769-IBu 0.81 2.00e-04 2.40e-03
Smp_134340.1 SmLINC05009-IBu 0.81 2.00e-04 2.40e-03
Smp_134340.1 SmLINC05171-IBu 0.86 2.60e-05 5.00e-04
Smp_134340.1 SmLINC06010-IBu 0.85 4.26e-05 7.00e-04
Smp_134340.1 SmLINC06221-IBu 0.80 3.00e-04 3.10e-03
Smp_134340.1 SmLINC06444-IBu 0.90 2.52e-06 9.90e-05
Smp_134340.1 SmLINC06536-IBu 0.83 9.29e-05 1.30e-03
Smp_134340.1 SmLINC06537-IBu 0.86 2.83e-05 5.00e-04
Smp_134340.1 SmLINC06543-IBu 0.82 1.00e-04 1.90e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_134340.1 0 -3.89 -5.61 0.57 -0.52
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_160360.1 0 0.49 1.23 10.10 7.29

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_134340.1 Smp_068270.1 0.9 4.05e-06 1.00e-04
Smp_154190.1 Smp_134340.1 0.9 3.80e-06 1.00e-04
Smp_160360.1 Smp_134340.1 0.9 2.82e-06 1.00e-04