Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_134030.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
Smp_134030.1 0 -1.64 -2.27 -8.45 -6.80

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_134030.1 SmLINC00004-IBu -0.81 1.00e-04 2.20e-03
Smp_134030.1 SmLINC00369-IBu -0.83 1.00e-04 1.60e-03
Smp_134030.1 SmLINC00376-IBu -0.88 1.34e-05 3.00e-04
Smp_134030.1 SmLINC00525-IBu -0.81 1.00e-04 2.30e-03
Smp_134030.1 SmLINC01084-IBu -0.81 2.00e-04 2.30e-03
Smp_134030.1 SmLINC01171-IBu -0.81 1.00e-04 2.30e-03
Smp_134030.1 SmLINC01431-IBu -0.84 6.69e-05 1.00e-03
Smp_134030.1 SmLINC02084-IBu -0.82 1.00e-04 1.90e-03
Smp_134030.1 SmLINC04421-IBu -0.84 7.89e-05 1.10e-03
Smp_134030.1 SmLINC05604-IBu -0.80 2.00e-04 2.90e-03