Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_133830.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
SmLINC01230-IBu 0 6.45 0.00 2.13 3.20
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC04693-IBu 0 7.21 3.85 4.35 6.49
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
SmLINC06667-IBu 0 5.49 2.05 4.25 3.56
Smp_133830.1 0 0.07 -2.63 -3.15 -5.03

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_133830.1 SmLINC00554-IBu 0.80 2.00e-04 3.00e-03
Smp_133830.1 SmLINC00556-IBu 0.82 1.00e-04 1.90e-03
Smp_133830.1 SmLINC00787-IBu 0.93 2.14e-07 1.74e-05
Smp_133830.1 SmLINC01230-IBu 0.90 3.21e-06 1.00e-04
Smp_133830.1 SmLINC01429-IBu 0.95 4.63e-08 6.06e-06
Smp_133830.1 SmLINC01979-IBu 0.84 6.19e-05 9.00e-04
Smp_133830.1 SmLINC03111-IBu 0.85 4.06e-05 7.00e-04
Smp_133830.1 SmLINC03116-IBu 0.93 2.58e-07 1.98e-05
Smp_133830.1 SmLINC03443-IBu 0.82 1.00e-04 1.70e-03
Smp_133830.1 SmLINC04144-IBu 0.86 2.91e-05 5.00e-04
Smp_133830.1 SmLINC04693-IBu 0.81 1.00e-04 2.20e-03
Smp_133830.1 SmLINC05840-IBu 0.85 5.87e-05 9.00e-04
Smp_133830.1 SmLINC06436-IBu 0.87 1.98e-05 4.00e-04
Smp_133830.1 SmLINC06667-IBu 0.80 3.00e-04 3.20e-03