Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_133770.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_133770.1 SmLINC02039-IBu 0.86 3.30e-05 6.00e-04
Smp_133770.1 SmLINC02678-IBu 0.91 2.15e-06 8.84e-05
Smp_133770.1 SmLINC02888-IBu 0.86 3.42e-05 6.00e-04
Smp_133770.1 SmLINC06128-IBu 0.87 1.58e-05 3.00e-04
Smp_133770.1 SmLINC06892-IBu 0.84 6.98e-05 1.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC05095-IBu 0 -2.89 -9.14 -9.14 -9.14
Smp_002640.1 0 -3.78 -3.97 -2.17 -4.00
Smp_003770.1 0 -2.73 -3.76 -4.30 -3.65
Smp_005860.1 0 -1.88 -5.14 -8.12 -7.71
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_006560.1 0 -3.55 -6.46 -6.31 -5.44
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_014400.5 0 -2.15 -4.06 -6.32 -9.42
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_019750.2 0 -2.70 -5.17 -4.10 -4.19
Smp_021730.1 0 -2.52 -3.78 -4.00 -3.90
Smp_022430.1 0 -3.19 -4.81 -4.61 -4.50
Smp_030500.1 0 -2.77 -6.42 -6.74 -6.44
Smp_033610.1 0 -2.04 -4.32 -5.07 -4.63
Smp_034550.1 0 -2.91 -5.29 -2.60 -4.93
Smp_036250.1 0 -3.24 -3.82 -4.15 -3.72
Smp_038560.6 0 -3.08 -4.79 -5.99 -7.18
Smp_042160.1 0 -2.29 -5.11 -4.28 -4.75
Smp_046090.1 0 -4.19 -6.28 -7.15 -8.65
Smp_052060.1 0 -2.31 -3.14 -4.09 -3.50
Smp_053700.1 0 -3.20 -7.73 -2.51 -1.90
Smp_054470.1 0 -3.95 -5.79 -2.45 -3.05
Smp_057060.1 0 -3.71 -5.93 -6.06 -6.08
Smp_057790.1 0 -3.82 -7.29 -4.86 -7.43
Smp_059930.1 0 -3.75 -7.72 -3.31 -3.23
Smp_061870.1 0 -2.53 -4.47 -5.29 -5.38
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02
Smp_065580.1 0 -2.41 -12.61 -6.08 -5.45
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_074560.1 0 -3.36 -3.15 -2.58 -5.11
Smp_074570.1 0 -1.85 -4.23 -8.15 -8.27
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_097490.1 0 -3.10 -5.15 -2.72 -1.99
Smp_099420.1 0 -2.79 -4.14 -4.04 -2.98
Smp_099670.1 0 -3.51 -4.19 -5.26 -6.78
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_105610.1 0 -3.66 -7.36 -5.82 -7.17
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_108050.1 0 -2.06 -3.07 -8.81 -9.10
Smp_113710.1 0 -3.35 -5.78 -3.90 -2.82
Smp_125440.1 0 -4.16 -3.48 -3.28 -4.46
Smp_129190.1 0 -4.25 -6.94 -3.48 -4.65
Smp_133310.1 0 -1.74 -4.20 -4.35 -4.73
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_135250.1 0 -4.50 -7.60 -5.52 -7.87
Smp_139250.1 0 -4.34 -6.53 -2.10 -4.27
Smp_145340.1 0 -2.62 -9.51 -6.28 -7.06
Smp_148800.1 0 -3.26 -5.77 -5.61 -4.70
Smp_149190.1 0 -3.08 -5.94 -9.47 -9.18
Smp_152260.1 0 -3.17 -4.39 -4.03 -4.71
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_154020.1 0 -1.89 -2.51 -3.88 -5.45
Smp_154300.1 0 -4.18 -5.59 -3.13 -4.15
Smp_154370.1 0 -2.82 -7.17 -3.52 -2.90
Smp_155890.1 0 -3.01 -4.45 -2.70 -3.71
Smp_157310.1 0 -3.02 -6.78 -4.07 -5.91
Smp_159190.1 0 -3.70 -3.60 -3.46 -3.88
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_179460.1 0 -2.52 -7.07 -4.09 -3.97
Smp_179640.1 0 -2.62 -9.51 -6.28 -7.06
Smp_183420.1 0 -2.62 -9.51 -6.28 -7.06
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_186610.1 0 -3.09 -6.92 -6.26 -7.07
Smp_190320.1 0 -2.26 -2.78 -8.01 -9.33
Smp_192880.1 0 -2.57 -3.41 -5.24 -6.71
Smp_194040.1 0 -2.17 -6.63 -5.72 -6.95
Smp_202700.1 0 -2.94 -2.50 -4.90 -6.94
Smp_205190.1 0 -5.03 -3.88 -4.78 -3.78
Smp_205900.1 0 -3.56 -6.12 -5.80 -6.36
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47
Smp_214150.1 0 -3.99 -7.32 -3.18 -5.90

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_133770.1 SmLINC02678-IBu 0.91 2.15e-06 9.15e-05
Smp_133770.1 SmLINC05095-IBu 0.92 6.63e-07 4.00e-05
Smp_002640.1 Smp_133770.1 0.92 1.01e-06 5.40e-05
Smp_003770.1 Smp_133770.1 0.96 1.16e-08 2.53e-06
Smp_005860.1 Smp_133770.1 0.91 2.38e-06 9.83e-05
Smp_005860.3 Smp_133770.1 0.91 2.15e-06 9.16e-05
Smp_006560.1 Smp_133770.1 0.99 1.20e-14 4.43e-10
Smp_009650.2 Smp_133770.1 0.92 9.41e-07 5.11e-05
Smp_014400.5 Smp_133770.1 0.90 4.12e-06 1.00e-04
Smp_018880.1 Smp_133770.1 0.95 1.87e-08 3.48e-06
Smp_019750.2 Smp_133770.1 0.96 7.25e-09 1.84e-06
Smp_133770.1 Smp_021730.1 0.92 7.05e-07 4.17e-05
Smp_022430.1 Smp_133770.1 0.99 4.35e-15 2.35e-10
Smp_030500.1 Smp_133770.1 0.90 2.83e-06 1.00e-04
Smp_033610.1 Smp_133770.1 0.93 2.06e-07 1.77e-05
Smp_034550.1 Smp_133770.1 0.90 2.74e-06 1.00e-04
Smp_036250.1 Smp_133770.1 0.90 3.05e-06 1.00e-04
Smp_038560.6 Smp_133770.1 0.95 2.09e-08 3.74e-06
Smp_042160.1 Smp_133770.1 0.97 1.84e-09 7.53e-07
Smp_133770.1 Smp_046090.1 0.92 7.73e-07 4.45e-05
Smp_052060.1 Smp_133770.1 0.93 3.49e-07 2.56e-05
Smp_053700.1 Smp_133770.1 0.93 3.14e-07 2.38e-05
Smp_054470.1 Smp_133770.1 0.92 5.23e-07 3.39e-05
Smp_057060.1 Smp_133770.1 0.98 1.87e-11 4.06e-08
Smp_133770.1 Smp_057790.1 0.96 6.39e-09 1.69e-06
Smp_059930.1 Smp_133770.1 0.91 1.25e-06 6.26e-05
Smp_061870.1 Smp_133770.1 0.96 8.66e-09 2.07e-06
Smp_061940.1 Smp_133770.1 0.97 1.76e-09 7.33e-07
Smp_065580.1 Smp_133770.1 0.90 4.73e-06 1.00e-04
Smp_133770.1 Smp_071380.2 0.90 2.80e-06 1.00e-04
Smp_074560.1 Smp_133770.1 0.93 2.82e-07 2.21e-05
Smp_074570.1 Smp_133770.1 0.90 3.60e-06 1.00e-04
Smp_133770.1 Smp_085290.3 0.91 1.84e-06 8.20e-05
Smp_097490.1 Smp_133770.1 0.93 1.97e-07 1.72e-05
Smp_099420.1 Smp_133770.1 0.98 6.97e-11 9.30e-08
Smp_099670.1 Smp_133770.1 0.91 1.42e-06 6.86e-05
Smp_102670.1 Smp_133770.1 0.98 6.39e-11 8.79e-08
Smp_105610.1 Smp_133770.1 0.98 1.34e-10 1.40e-07
Smp_106390.1 Smp_133770.1 0.92 6.74e-07 4.04e-05
Smp_108050.1 Smp_133770.1 0.91 1.89e-06 8.37e-05
Smp_113710.1 Smp_133770.1 0.94 9.49e-08 1.04e-05
Smp_125440.1 Smp_133770.1 0.96 4.83e-09 1.41e-06
Smp_129190.1 Smp_133770.1 0.94 1.70e-07 1.56e-05
Smp_133310.1 Smp_133770.1 0.91 1.94e-06 8.53e-05
Smp_134410.1 Smp_133770.1 0.90 3.22e-06 1.00e-04
Smp_135250.1 Smp_133770.1 0.99 8.65e-13 6.06e-09
Smp_139250.1 Smp_133770.1 0.91 1.89e-06 8.37e-05
Smp_145340.1 Smp_133770.1 0.95 1.85e-08 3.44e-06
Smp_148800.1 Smp_133770.1 0.94 1.31e-07 1.30e-05
Smp_149190.1 Smp_133770.1 0.90 3.66e-06 1.00e-04
Smp_152260.1 Smp_133770.1 0.94 6.22e-08 7.83e-06
Smp_133770.1 Smp_153240.1 0.99 6.22e-17 1.25e-11
Smp_154020.1 Smp_133770.1 0.91 1.22e-06 6.15e-05
Smp_154300.1 Smp_133770.1 0.95 4.82e-08 6.59e-06
Smp_154370.1 Smp_133770.1 0.92 8.85e-07 4.89e-05
Smp_155890.1 Smp_133770.1 0.92 1.08e-06 5.63e-05
Smp_157310.1 Smp_133770.1 0.98 1.54e-11 3.60e-08
Smp_133770.1 Smp_159190.1 0.96 9.99e-09 2.28e-06
Smp_169190.1 Smp_133770.1 0.97 7.32e-10 4.17e-07
Smp_178240.1 Smp_133770.1 0.98 5.37e-12 1.87e-08
Smp_179460.1 Smp_133770.1 0.92 5.98e-07 3.72e-05
Smp_133770.1 Smp_179640.1 0.95 1.85e-08 3.44e-06
Smp_133770.1 Smp_183420.1 0.95 1.85e-08 3.44e-06
Smp_184460.1 Smp_133770.1 0.93 3.66e-07 2.64e-05
Smp_185360.1 Smp_133770.1 0.96 9.44e-09 2.19e-06
Smp_133770.1 Smp_186610.1 0.92 1.17e-06 5.98e-05
Smp_190320.1 Smp_133770.1 0.90 3.13e-06 1.00e-04
Smp_192880.1 Smp_133770.1 0.92 9.39e-07 5.10e-05
Smp_194040.1 Smp_133770.1 0.93 3.31e-07 2.47e-05
Smp_202700.1 Smp_133770.1 0.92 6.68e-07 4.02e-05
Smp_205190.1 Smp_133770.1 0.96 5.51e-09 1.54e-06
Smp_205900.1 Smp_133770.1 0.99 4.50e-13 4.03e-09
Smp_206150.1 Smp_133770.1 0.91 2.43e-06 9.99e-05
Smp_133770.1 Smp_214150.1 0.94 6.97e-08 8.46e-06