Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_132440.2 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
Smp_132440.2 0 4.00 6.60 8.31 7.55

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_132440.2 SmLINC06415-IBu 0.71 2.80e-03 1.38e-02
Smp_132440.2 SmLINC06418-IBu 0.85 5.75e-05 7.00e-04
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC04953-IBu 0 4.15 3.52 7.42 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06205-IBu 0 0.00 7.73 9.47 9.16
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_132440.2 0 4.00 6.60 8.31 7.55

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_132440.2 SmLINC00477-IBu 0.88 1.39e-05 3.00e-04
Smp_132440.2 SmLINC00484-IBu 0.88 1.22e-05 3.00e-04
Smp_132440.2 SmLINC00548-IBu 0.91 2.29e-06 9.25e-05
Smp_132440.2 SmLINC00633-IBu 0.83 8.93e-05 1.30e-03
Smp_132440.2 SmLINC00769-IBu 0.92 7.10e-07 4.03e-05
Smp_132440.2 SmLINC01066-IBu 0.86 3.46e-05 6.00e-04
Smp_132440.2 SmLINC01122-IBu 0.83 1.00e-04 1.50e-03
Smp_132440.2 SmLINC01139-IBu 0.91 2.33e-06 9.38e-05
Smp_132440.2 SmLINC01171-IBu 0.81 2.00e-04 2.50e-03
Smp_132440.2 SmLINC01231-IBu 0.88 1.11e-05 2.00e-04
Smp_132440.2 SmLINC01433-IBu 0.81 2.00e-04 2.60e-03
Smp_132440.2 SmLINC01435-IBu 0.87 1.84e-05 4.00e-04
Smp_132440.2 SmLINC01538-IBu 0.91 2.48e-06 9.79e-05
Smp_132440.2 SmLINC01569-IBu 0.85 4.00e-05 7.00e-04
Smp_132440.2 SmLINC01733-IBu 0.87 1.55e-05 3.00e-04
Smp_132440.2 SmLINC01746-IBu 0.90 3.39e-06 1.00e-04
Smp_132440.2 SmLINC01822-IBu 0.80 2.00e-04 3.10e-03
Smp_132440.2 SmLINC02546-IBu 0.82 1.00e-04 2.10e-03
Smp_132440.2 SmLINC03309-IBu 0.92 7.29e-07 4.10e-05
Smp_132440.2 SmLINC03542-IBu 0.84 7.44e-05 1.10e-03
Smp_132440.2 SmLINC03693-IBu 0.88 1.24e-05 3.00e-04
Smp_132440.2 SmLINC04054-IBu 0.90 4.62e-06 1.00e-04
Smp_132440.2 SmLINC04345-IBu 0.91 1.28e-06 6.14e-05
Smp_132440.2 SmLINC04432-IBu 0.94 7.80e-08 8.65e-06
Smp_132440.2 SmLINC04475-IBu 0.97 1.10e-09 5.03e-07
Smp_132440.2 SmLINC04637-IBu 0.90 2.76e-06 1.00e-04
Smp_132440.2 SmLINC04663-IBu 0.90 4.55e-06 1.00e-04
Smp_132440.2 SmLINC04684-IBu 0.84 8.75e-05 1.20e-03
Smp_132440.2 SmLINC04747-IBu 0.89 5.26e-06 1.00e-04
Smp_132440.2 SmLINC04769-IBu 0.87 2.05e-05 4.00e-04
Smp_132440.2 SmLINC04953-IBu 0.86 3.39e-05 6.00e-04
Smp_132440.2 SmLINC05009-IBu 0.85 4.66e-05 8.00e-04
Smp_132440.2 SmLINC05147-IBu 0.81 1.00e-04 2.10e-03
Smp_132440.2 SmLINC05171-IBu 0.88 1.05e-05 2.00e-04
Smp_132440.2 SmLINC05258-IBu 0.84 7.96e-05 1.10e-03
Smp_132440.2 SmLINC05632-IBu 0.84 7.38e-05 1.10e-03
Smp_132440.2 SmLINC05870-IBu 0.86 3.11e-05 6.00e-04
Smp_132440.2 SmLINC06007-IBu 0.81 2.00e-04 2.70e-03
Smp_132440.2 SmLINC06010-IBu 0.95 1.92e-08 3.32e-06
Smp_132440.2 SmLINC06205-IBu 0.81 2.00e-04 2.50e-03
Smp_132440.2 SmLINC06221-IBu 0.90 4.07e-06 1.00e-04
Smp_132440.2 SmLINC06418-IBu 0.85 5.75e-05 9.00e-04
Smp_132440.2 SmLINC06444-IBu 0.95 5.71e-08 6.98e-06
Smp_132440.2 SmLINC06449-IBu 0.90 3.96e-06 1.00e-04
Smp_132440.2 SmLINC06536-IBu 0.87 1.81e-05 4.00e-04
Smp_132440.2 SmLINC06537-IBu 0.85 4.48e-05 7.00e-04
Smp_132440.2 SmLINC06543-IBu 0.88 1.48e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_129110.1 0 7.10 10.62 11.56 10.18
Smp_132440.2 0 4.00 6.60 8.31 7.55
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_175020.1 0 5.88 8.81 11.73 9.58

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014780.1 Smp_132440.2 0.92 1.00e-06 5.34e-05
Smp_034980.2 Smp_132440.2 0.90 2.81e-06 1.00e-04
Smp_132440.2 Smp_045200.1 0.92 7.48e-07 4.35e-05
Smp_132440.2 Smp_068270.1 0.92 6.30e-07 3.86e-05
Smp_118560.1 Smp_132440.2 0.90 3.17e-06 1.00e-04
Smp_132440.2 Smp_125200.1 0.97 1.75e-09 7.30e-07
Smp_132440.2 Smp_125210.1 0.90 2.81e-06 1.00e-04
Smp_129110.1 Smp_132440.2 0.94 1.04e-07 1.11e-05
Smp_150980.2 Smp_132440.2 0.90 2.84e-06 1.00e-04
Smp_154190.1 Smp_132440.2 0.90 2.76e-06 1.00e-04
Smp_160360.1 Smp_132440.2 0.91 2.08e-06 8.94e-05
Smp_132440.2 Smp_164550.1 0.93 5.12e-07 3.34e-05
Smp_170280.1 Smp_132440.2 0.91 1.67e-06 7.67e-05
Smp_132440.2 Smp_175020.1 0.90 3.86e-06 1.00e-04