Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_132210.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_132210.1 0 -1.38 -3.96 -4.62 -6.30

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_132210.1 SmLINC00554-IBu 0.88 1.10e-05 2.00e-04
Smp_132210.1 SmLINC00556-IBu 0.88 1.08e-05 2.00e-04
Smp_132210.1 SmLINC02888-IBu 0.95 5.89e-08 7.13e-06
Smp_132210.1 SmLINC05274-IBu 0.83 1.00e-04 1.40e-03
Smp_132210.1 SmLINC06128-IBu 0.84 8.27e-05 1.20e-03
Smp_132210.1 SmLINC06903-IBu 0.85 5.05e-05 8.00e-04