Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_131830.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC05888-IBu 0 4.50 1.82 -0.36 -2.39
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
Smp_131830.1 0 1.24 0.03 -5.02 -4.76

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_131830.1 SmLINC00026-IBu 0.83 1.00e-04 1.50e-03
Smp_131830.1 SmLINC00037-IBu 0.89 6.17e-06 1.00e-04
Smp_131830.1 SmLINC00133-IBu 0.88 1.22e-05 3.00e-04
Smp_131830.1 SmLINC00282-IBu 0.86 2.79e-05 5.00e-04
Smp_131830.1 SmLINC00294-IBu 0.82 1.00e-04 2.00e-03
Smp_131830.1 SmLINC00784-IBu 0.92 9.86e-07 5.08e-05
Smp_131830.1 SmLINC00893-IBu 0.81 2.00e-04 2.50e-03
Smp_131830.1 SmLINC01462-IBu 0.88 1.35e-05 3.00e-04
Smp_131830.1 SmLINC01486-IBu 0.90 4.49e-06 1.00e-04
Smp_131830.1 SmLINC01637-IBu 0.90 4.62e-06 1.00e-04
Smp_131830.1 SmLINC03056-IBu 0.92 8.58e-07 4.60e-05
Smp_131830.1 SmLINC03362-IBu 0.89 5.05e-06 1.00e-04
Smp_131830.1 SmLINC03848-IBu 0.87 2.16e-05 4.00e-04
Smp_131830.1 SmLINC03930-IBu 0.86 2.92e-05 5.00e-04
Smp_131830.1 SmLINC04075-IBu 0.84 7.80e-05 1.10e-03
Smp_131830.1 SmLINC04106-IBu 0.91 2.36e-06 9.46e-05
Smp_131830.1 SmLINC04271-IBu 0.83 1.00e-04 1.60e-03
Smp_131830.1 SmLINC04366-IBu 0.97 9.77e-10 4.64e-07
Smp_131830.1 SmLINC05284-IBu 0.81 2.00e-04 2.50e-03
Smp_131830.1 SmLINC05716-IBu 0.93 3.32e-07 2.36e-05
Smp_131830.1 SmLINC05720-IBu 0.89 8.00e-06 2.00e-04
Smp_131830.1 SmLINC05887-IBu 0.81 2.00e-04 2.30e-03
Smp_131830.1 SmLINC05888-IBu 0.82 1.00e-04 2.00e-03
Smp_131830.1 SmLINC06210-IBu 0.92 7.20e-07 4.06e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_131830.1 0 1.24 0.03 -5.02 -4.76
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_185170.1 0 0.77 -2.29 -11.66 -11.66
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_131830.1 Smp_035200.3 0.91 2.28e-06 9.55e-05
Smp_131830.1 Smp_111640.1 0.90 4.51e-06 1.00e-04
Smp_131830.1 Smp_184710.1 0.93 3.53e-07 2.58e-05
Smp_131830.1 Smp_185170.1 0.91 1.26e-06 6.30e-05
Smp_131830.1 Smp_185680.1 0.92 6.30e-07 3.86e-05
Smp_131830.1 Smp_204360.1 0.92 1.17e-06 5.97e-05
Smp_131830.1 Smp_205450.1 0.92 9.05e-07 4.97e-05