Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_131480.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_131480.1 0 2.45 0.00 4.36 6.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_131480.1 SmLINC00001-IBu 0.87 2.14e-05 4.00e-04
Smp_131480.1 SmLINC00004-IBu 0.85 5.37e-05 8.00e-04
Smp_131480.1 SmLINC00007-IBu 0.86 3.72e-05 6.00e-04
Smp_131480.1 SmLINC01520-IBu 0.91 2.49e-06 9.83e-05
Smp_131480.1 SmLINC02029-IBu 0.88 9.36e-06 2.00e-04
Smp_131480.1 SmLINC02376-IBu 0.83 1.00e-04 1.60e-03
Smp_131480.1 SmLINC02394-IBu 0.82 1.00e-04 2.10e-03
Smp_131480.1 SmLINC02539-IBu 0.90 4.27e-06 1.00e-04
Smp_131480.1 SmLINC02540-IBu 0.88 1.36e-05 3.00e-04
Smp_131480.1 SmLINC02577-IBu 0.91 1.34e-06 6.32e-05
Smp_131480.1 SmLINC02776-IBu 0.84 7.57e-05 1.10e-03
Smp_131480.1 SmLINC02783-IBu 0.91 1.21e-06 5.87e-05
Smp_131480.1 SmLINC02786-IBu 0.88 1.32e-05 3.00e-04
Smp_131480.1 SmLINC03326-IBu 0.87 1.52e-05 3.00e-04
Smp_131480.1 SmLINC03658-IBu 0.83 9.14e-05 1.30e-03
Smp_131480.1 SmLINC04235-IBu 0.89 8.73e-06 2.00e-04
Smp_131480.1 SmLINC04237-IBu 0.88 9.57e-06 2.00e-04
Smp_131480.1 SmLINC04627-IBu 0.90 4.53e-06 1.00e-04
Smp_131480.1 SmLINC05289-IBu 0.82 1.00e-04 2.00e-03
Smp_131480.1 SmLINC05404-IBu 0.86 3.63e-05 6.00e-04
Smp_131480.1 SmLINC05604-IBu 0.82 1.00e-04 2.00e-03
Smp_131480.1 SmLINC05684-IBu 0.92 1.05e-06 5.33e-05
Smp_131480.1 SmLINC06239-IBu 0.82 1.00e-04 2.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_131480.1 0 2.45 0.00 4.36 6.89
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_205580.1 0 2.85 4.80 9.78 12.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004420.3 Smp_131480.1 0.90 3.91e-06 1.00e-04
Smp_007950.1 Smp_131480.1 0.91 2.42e-06 9.97e-05
Smp_016490.2 Smp_131480.1 0.91 2.34e-06 9.73e-05
Smp_131480.1 Smp_028870.1 0.90 3.21e-06 1.00e-04
Smp_085180.1 Smp_131480.1 0.91 2.02e-06 8.77e-05
Smp_102780.1 Smp_131480.1 0.91 2.15e-06 9.15e-05
Smp_105450.2 Smp_131480.1 0.91 1.32e-06 6.51e-05
Smp_123880.1 Smp_131480.1 0.91 1.68e-06 7.70e-05
Smp_131480.1 Smp_130100.1 0.90 2.57e-06 1.00e-04
Smp_131480.1 Smp_131410.1 0.91 1.51e-06 7.15e-05
Smp_136730.1 Smp_131480.1 0.92 9.87e-07 5.28e-05
Smp_137700.1 Smp_131480.1 0.90 3.36e-06 1.00e-04
Smp_137720.1 Smp_131480.1 0.91 1.37e-06 6.68e-05
Smp_139160.1 Smp_131480.1 0.90 2.81e-06 1.00e-04
Smp_139240.1 Smp_131480.1 0.92 8.16e-07 4.62e-05
Smp_162320.1 Smp_131480.1 0.92 1.06e-06 5.58e-05
Smp_163700.1 Smp_131480.1 0.91 2.24e-06 9.42e-05
Smp_164320.1 Smp_131480.1 0.91 2.02e-06 8.76e-05
Smp_181070.1 Smp_131480.1 0.92 1.02e-06 5.43e-05
Smp_187140.1 Smp_131480.1 0.92 7.91e-07 4.52e-05
Smp_194380.1 Smp_131480.1 0.91 1.54e-06 7.25e-05
Smp_131480.1 Smp_194910.1 0.92 6.98e-07 4.14e-05
Smp_203030.1 Smp_131480.1 0.90 4.68e-06 1.00e-04
Smp_205580.1 Smp_131480.1 0.92 7.30e-07 4.27e-05