Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_131370.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
Smp_131370.1 0 -1.93 -1.93 7.09 8.19

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_131370.1 SmLINC01637-IBu -0.72 2.10e-03 1.12e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_131370.1 0 -1.93 -1.93 7.09 8.19

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_131370.1 SmLINC00001-IBu 0.91 2.01e-06 8.45e-05
Smp_131370.1 SmLINC00004-IBu 0.92 1.12e-06 5.56e-05
Smp_131370.1 SmLINC00007-IBu 0.84 6.65e-05 1.00e-03
Smp_131370.1 SmLINC00266-IBu 0.89 6.80e-06 2.00e-04
Smp_131370.1 SmLINC00294-IBu -0.80 3.00e-04 3.10e-03
Smp_131370.1 SmLINC00369-IBu 0.87 1.59e-05 3.00e-04
Smp_131370.1 SmLINC00376-IBu 0.82 1.00e-04 2.00e-03
Smp_131370.1 SmLINC00525-IBu 0.92 9.48e-07 4.94e-05
Smp_131370.1 SmLINC00633-IBu 0.83 1.00e-04 1.40e-03
Smp_131370.1 SmLINC01084-IBu 0.92 1.10e-06 5.49e-05
Smp_131370.1 SmLINC01431-IBu 0.89 7.84e-06 2.00e-04
Smp_131370.1 SmLINC01432-IBu 0.88 1.46e-05 3.00e-04
Smp_131370.1 SmLINC01520-IBu 0.92 1.12e-06 5.57e-05
Smp_131370.1 SmLINC02029-IBu 0.86 3.09e-05 6.00e-04
Smp_131370.1 SmLINC02084-IBu 0.92 6.85e-07 3.92e-05
Smp_131370.1 SmLINC02376-IBu 0.84 7.66e-05 1.10e-03
Smp_131370.1 SmLINC02394-IBu 0.87 1.61e-05 3.00e-04
Smp_131370.1 SmLINC02539-IBu 0.93 4.22e-07 2.79e-05
Smp_131370.1 SmLINC02540-IBu 0.91 2.31e-06 9.32e-05
Smp_131370.1 SmLINC02545-IBu 0.90 3.55e-06 1.00e-04
Smp_131370.1 SmLINC02546-IBu 0.83 9.76e-05 1.30e-03
Smp_131370.1 SmLINC02577-IBu 0.90 3.13e-06 1.00e-04
Smp_131370.1 SmLINC02783-IBu 0.82 1.00e-04 1.80e-03
Smp_131370.1 SmLINC03108-IBu 0.87 1.88e-05 4.00e-04
Smp_131370.1 SmLINC03326-IBu 0.85 5.47e-05 9.00e-04
Smp_131370.1 SmLINC03658-IBu 0.85 3.92e-05 7.00e-04
Smp_131370.1 SmLINC03849-IBu -0.82 1.00e-04 2.00e-03
Smp_131370.1 SmLINC03927-IBu 0.93 4.54e-07 2.94e-05
Smp_131370.1 SmLINC04235-IBu 0.83 9.06e-05 1.30e-03
Smp_131370.1 SmLINC04421-IBu 0.97 1.41e-09 5.91e-07
Smp_131370.1 SmLINC04423-IBu 0.84 6.65e-05 1.00e-03
Smp_131370.1 SmLINC04478-IBu 0.80 3.00e-04 3.20e-03
Smp_131370.1 SmLINC04896-IBu 0.81 2.00e-04 2.40e-03
Smp_131370.1 SmLINC05147-IBu 0.82 1.00e-04 1.80e-03
Smp_131370.1 SmLINC05274-IBu -0.80 2.00e-04 3.10e-03
Smp_131370.1 SmLINC05289-IBu 0.93 2.64e-07 2.01e-05
Smp_131370.1 SmLINC05404-IBu 0.82 1.00e-04 1.80e-03
Smp_131370.1 SmLINC05604-IBu 0.97 6.47e-10 3.56e-07
Smp_131370.1 SmLINC05684-IBu 0.84 6.41e-05 1.00e-03
Smp_131370.1 SmLINC06024-IBu 0.89 6.13e-06 1.00e-04
Smp_131370.1 SmLINC06145-IBu 0.81 2.00e-04 2.30e-03
Smp_131370.1 SmLINC06490-IBu -0.82 1.00e-04 1.90e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_131370.1 0 -1.93 -1.93 7.09 8.19
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 Smp_131370.1 0.90 4.66e-06 1.00e-04
Smp_033260.1 Smp_131370.1 0.93 2.49e-07 2.02e-05
Smp_037720.1 Smp_131370.1 0.94 1.25e-07 1.26e-05
Smp_050350.3 Smp_131370.1 0.92 7.14e-07 4.21e-05
Smp_056460.1 Smp_131370.1 0.95 1.94e-08 3.56e-06
Smp_083430.1 Smp_131370.1 0.93 2.89e-07 2.25e-05
Smp_095410.1 Smp_131370.1 0.90 3.04e-06 1.00e-04
Smp_131410.1 Smp_131370.1 0.90 3.28e-06 1.00e-04
Smp_137810.1 Smp_131370.1 0.95 4.19e-08 5.99e-06
Smp_140720.1 Smp_131370.1 0.93 1.99e-07 1.74e-05
Smp_155570.1 Smp_131370.1 0.95 3.52e-08 5.33e-06
Smp_156930.1 Smp_131370.1 0.93 4.46e-07 3.03e-05
Smp_172960.1 Smp_131370.1 0.91 1.64e-06 7.59e-05
Smp_192780.1 Smp_131370.1 0.93 2.72e-07 2.15e-05
Smp_194860.1 Smp_131370.1 0.93 4.96e-07 3.26e-05
Smp_196830.1 Smp_131370.1 0.94 6.62e-08 8.17e-06
Smp_202610.1 Smp_131370.1 0.92 6.19e-07 3.81e-05
Smp_203030.1 Smp_131370.1 0.91 2.40e-06 9.91e-05