Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_130970.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_130970.1 0 4.67 2.67 4.97 10.18

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_130970.1 SmLINC02029-IBu 0.84 6.14e-05 9.00e-04
Smp_130970.1 SmLINC02376-IBu 0.85 4.40e-05 7.00e-04
Smp_130970.1 SmLINC02577-IBu 0.80 3.00e-04 3.20e-03
Smp_130970.1 SmLINC02783-IBu 0.84 7.52e-05 1.10e-03
Smp_130970.1 SmLINC02786-IBu 0.84 7.95e-05 1.10e-03
Smp_130970.1 SmLINC03658-IBu 0.83 1.00e-04 1.60e-03
Smp_130970.1 SmLINC04235-IBu 0.93 2.48e-07 1.93e-05
Smp_130970.1 SmLINC04627-IBu 0.88 1.08e-05 2.00e-04
Smp_130970.1 SmLINC04896-IBu 0.80 2.00e-04 3.10e-03
Smp_130970.1 SmLINC05404-IBu 0.87 1.80e-05 4.00e-04
Smp_130970.1 SmLINC05684-IBu 0.87 2.21e-05 4.00e-04
Smp_130970.1 SmLINC06239-IBu 0.98 3.23e-11 5.22e-08
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00186-IBu 0 -0.08 1.30 4.43 6.88
SmLINC00523-IBu 0 0.21 -4.03 0.53 3.02
SmLINC00890-IBu 0 0.00 0.00 3.45 7.41
SmLINC01330-IBu 0 1.65 1.89 5.35 8.80
SmLINC02111-IBu 0 -3.32 -1.19 -3.32 4.13
SmLINC02117-IBu 0 -4.43 -0.46 1.87 4.79
SmLINC03370-IBu 0 4.85 4.34 5.70 10.09
SmLINC04088-IBu 0 -1.76 -2.21 1.40 5.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04710-IBu 0 -0.76 -0.04 -2.76 4.43
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06797-IBu 0 0.00 0.00 7.22 9.62
SmLINC06800-IBu 0 -3.84 -1.17 -0.07 3.49
Smp_000190.1 0 0.99 1.82 3.64 5.94
Smp_000270.1 0 -3.32 -1.95 -0.32 6.22
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_000500.1 0 -1.37 -5.63 -0.86 4.61
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_013540.1 0 0.90 0.25 0.92 6.94
Smp_026400.1 0 0.88 0.91 0.27 4.54
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_041880.1 0 4.35 0.78 4.43 8.11
Smp_050270.1 0 0.23 -0.62 3.06 9.37
Smp_055260.1 0 -1.90 -1.11 0.06 5.74
Smp_055740.1 0 -1.21 -3.82 3.49 7.06
Smp_056350.1 0 0.33 1.23 3.20 6.26
Smp_056700.1 0 -0.74 -1.75 0.30 4.19
Smp_063520.1 0 3.75 2.97 5.08 8.02
Smp_070360.1 0 -5.70 -3.47 -0.68 2.98
Smp_076320.1 0 -0.05 1.14 4.78 9.81
Smp_077890.1 0 -1.12 -4.35 -0.67 5.48
Smp_077900.1 0 -0.17 -0.11 3.03 6.89
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_078720.1 0 1.88 0.00 3.32 8.87
Smp_095350.1 0 0.76 -2.26 1.00 7.32
Smp_102020.1 0 -0.28 -4.43 0.53 6.11
Smp_105420.1 0 1.81 1.45 7.11 9.80
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_112450.1 0 -3.65 -3.65 -0.74 5.88
Smp_121070.1 0 -4.74 0.09 3.27 7.22
Smp_121930.1 0 1.51 3.52 6.68 9.02
Smp_121930.2 0 1.74 1.71 6.11 8.12
Smp_122280.1 0 0.00 0.00 4.72 8.48
Smp_128160.1 0 0.17 1.21 1.97 4.65
Smp_129410.1 0 0.18 1.93 1.84 4.77
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_131500.1 0 1.11 1.77 4.12 6.64
Smp_137360.1 0 0.00 2.23 6.21 9.69
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_138570.1 0 -1.57 -6.45 1.13 7.79
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_141160.1 0 0.62 1.59 2.79 5.35
Smp_141450.2 0 3.72 3.76 3.69 9.11
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_145490.1 0 3.57 3.53 3.37 9.86
Smp_146180.1 0 0.60 -1.14 0.53 4.12
Smp_146480.1 0 0.00 0.00 4.08 8.10
Smp_146810.1 0 0.41 0.21 2.10 6.19
Smp_147320.1 0 0.63 -4.89 1.01 4.47
Smp_148390.1 0 2.10 -2.34 1.95 8.66
Smp_149490.1 0 0.92 1.54 2.36 4.88
Smp_151160.1 0 1.51 0.84 -0.56 5.60
Smp_151560.1 0 2.28 2.16 3.43 5.85
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_153070.1 0 -1.48 -3.15 4.90 8.45
Smp_154390.1 0 1.91 0.76 3.80 7.69
Smp_154590.1 0 1.49 -3.83 3.03 7.38
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_164040.1 0 0.77 2.16 4.05 6.32
Smp_164140.1 0 1.44 1.54 1.73 5.01
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_165360.1 0 1.99 1.06 3.05 8.40
Smp_166690.1 0 0.00 3.50 0.00 7.76
Smp_172980.1 0 -2.44 -2.43 2.35 5.58
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_179170.1 0 1.52 0.09 6.08 8.60
Smp_179600.1 0 -1.93 -1.93 -1.93 5.34
Smp_179710.1 0 0.24 -0.01 -0.87 4.04
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_181390.1 0 -0.28 0.93 2.24 4.62
Smp_191910.1 0 -4.11 -4.11 6.38 13.11
Smp_194840.1 0 1.29 1.90 5.62 8.30
Smp_200110.1 0 1.46 2.99 3.53 6.65
Smp_201330.1 0 1.13 0.91 1.95 4.84
Smp_202830.1 0 0.98 -0.31 1.06 6.94
Smp_209060.1 0 0.56 0.29 3.49 5.62
Smp_213420.1 0 0.19 1.45 1.85 4.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_130970.1 SmLINC00186-IBu 0.93 2.99e-07 2.30e-05
Smp_130970.1 SmLINC00523-IBu 0.92 9.74e-07 5.24e-05
Smp_130970.1 SmLINC00890-IBu 0.94 7.78e-08 9.11e-06
Smp_130970.1 SmLINC01330-IBu 0.92 6.09e-07 3.77e-05
Smp_130970.1 SmLINC02111-IBu 0.90 3.16e-06 1.00e-04
Smp_130970.1 SmLINC02117-IBu 0.90 3.72e-06 1.00e-04
Smp_130970.1 SmLINC03370-IBu 0.96 1.44e-08 2.91e-06
Smp_130970.1 SmLINC04088-IBu 0.91 2.09e-06 8.97e-05
Smp_130970.1 SmLINC04235-IBu 0.93 2.48e-07 2.02e-05
Smp_130970.1 SmLINC04710-IBu 0.93 2.15e-07 1.83e-05
Smp_130970.1 SmLINC06239-IBu 0.98 3.23e-11 5.74e-08
Smp_130970.1 SmLINC06797-IBu 0.96 1.08e-08 2.41e-06
Smp_130970.1 SmLINC06800-IBu 0.92 7.08e-07 4.19e-05
Smp_000190.1 Smp_130970.1 0.91 1.69e-06 7.74e-05
Smp_000270.1 Smp_130970.1 0.98 1.18e-10 1.29e-07
Smp_000390.1 Smp_130970.1 0.98 2.33e-11 4.67e-08
Smp_000420.1 Smp_130970.1 0.92 6.86e-07 4.09e-05
Smp_000500.1 Smp_130970.1 0.92 8.57e-07 4.78e-05
Smp_004420.3 Smp_130970.1 0.93 5.06e-07 3.31e-05
Smp_130970.1 Smp_013540.1 0.93 4.37e-07 2.99e-05
Smp_026400.1 Smp_130970.1 0.97 6.11e-10 3.71e-07
Smp_130970.1 Smp_033250.1 0.90 2.80e-06 1.00e-04
Smp_041880.1 Smp_130970.1 0.96 3.99e-09 1.24e-06
Smp_050270.1 Smp_130970.1 0.92 6.27e-07 3.85e-05
Smp_055260.1 Smp_130970.1 0.97 9.69e-10 4.99e-07
Smp_130970.1 Smp_055740.1 0.95 1.60e-08 3.13e-06
Smp_056350.1 Smp_130970.1 0.93 3.01e-07 2.31e-05
Smp_056700.1 Smp_130970.1 0.98 5.03e-12 1.80e-08
Smp_130970.1 Smp_063520.1 0.95 1.63e-08 3.16e-06
Smp_130970.1 Smp_070360.1 0.96 2.85e-09 1.00e-06
Smp_076320.1 Smp_130970.1 0.99 9.36e-17 1.65e-11
Smp_077890.1 Smp_130970.1 0.97 2.95e-10 2.33e-07
Smp_077900.1 Smp_130970.1 0.92 7.92e-07 4.53e-05
Smp_077920.1 Smp_130970.1 0.92 1.00e-06 5.34e-05
Smp_078720.1 Smp_130970.1 0.94 1.06e-07 1.13e-05
Smp_130970.1 Smp_095350.1 0.99 1.35e-16 2.22e-11
Smp_102020.1 Smp_130970.1 0.95 3.69e-08 5.50e-06
Smp_105420.1 Smp_130970.1 0.91 1.36e-06 6.65e-05
Smp_130970.1 Smp_105450.2 0.90 4.40e-06 1.00e-04
Smp_112450.1 Smp_130970.1 0.97 2.31e-10 1.99e-07
Smp_121070.1 Smp_130970.1 0.99 1.17e-13 1.78e-09
Smp_121930.1 Smp_130970.1 0.91 1.31e-06 6.46e-05
Smp_130970.1 Smp_121930.2 0.91 2.23e-06 9.39e-05
Smp_122280.1 Smp_130970.1 0.90 4.16e-06 1.00e-04
Smp_130970.1 Smp_128160.1 0.95 3.26e-08 5.05e-06
Smp_130970.1 Smp_129410.1 0.91 1.35e-06 6.59e-05
Smp_131110.2 Smp_130970.1 0.94 1.16e-07 1.20e-05
Smp_131500.1 Smp_130970.1 0.92 8.08e-07 4.59e-05
Smp_130970.1 Smp_137360.1 0.94 1.77e-07 1.60e-05
Smp_137460.1 Smp_130970.1 0.96 6.73e-09 1.75e-06
Smp_130970.1 Smp_137700.1 0.93 2.48e-07 2.02e-05
Smp_138360.1 Smp_130970.1 0.97 9.72e-10 5.00e-07
Smp_130970.1 Smp_138570.1 0.91 1.88e-06 8.34e-05
Smp_139160.1 Smp_130970.1 0.90 4.52e-06 1.00e-04
Smp_141160.1 Smp_130970.1 0.95 1.70e-08 3.26e-06
Smp_141450.2 Smp_130970.1 0.90 3.67e-06 1.00e-04
Smp_144440.1 Smp_130970.1 0.96 7.03e-09 1.80e-06
Smp_145490.1 Smp_130970.1 0.94 6.97e-08 8.46e-06
Smp_146180.1 Smp_130970.1 0.95 3.71e-08 5.52e-06
Smp_146480.1 Smp_130970.1 0.92 6.98e-07 4.14e-05
Smp_130970.1 Smp_146810.1 0.96 1.24e-08 2.64e-06
Smp_130970.1 Smp_147320.1 0.92 8.39e-07 4.71e-05
Smp_148390.1 Smp_130970.1 0.91 1.47e-06 7.01e-05
Smp_130970.1 Smp_149490.1 0.90 4.07e-06 1.00e-04
Smp_151160.1 Smp_130970.1 0.93 3.12e-07 2.37e-05
Smp_130970.1 Smp_151560.1 0.90 4.51e-06 1.00e-04
Smp_152150.1 Smp_130970.1 0.93 2.45e-07 2.00e-05
Smp_153070.1 Smp_130970.1 0.92 5.24e-07 3.39e-05
Smp_130970.1 Smp_154390.1 0.95 4.51e-08 6.30e-06
Smp_154590.1 Smp_130970.1 0.93 2.41e-07 1.98e-05
Smp_130970.1 Smp_155310.1 0.91 1.62e-06 7.52e-05
Smp_164040.1 Smp_130970.1 0.92 5.83e-07 3.65e-05
Smp_164140.1 Smp_130970.1 0.91 1.50e-06 7.12e-05
Smp_164400.1 Smp_130970.1 0.93 3.45e-07 2.54e-05
Smp_165360.1 Smp_130970.1 0.93 1.95e-07 1.71e-05
Smp_166690.1 Smp_130970.1 0.92 7.34e-07 4.29e-05
Smp_172980.1 Smp_130970.1 0.93 4.56e-07 3.08e-05
Smp_175560.1 Smp_130970.1 0.94 7.15e-08 8.61e-06
Smp_179170.1 Smp_130970.1 0.92 6.20e-07 3.82e-05
Smp_179600.1 Smp_130970.1 0.94 1.08e-07 1.14e-05
Smp_130970.1 Smp_179710.1 0.90 2.98e-06 1.00e-04
Smp_181070.1 Smp_130970.1 0.90 2.66e-06 1.00e-04
Smp_181390.1 Smp_130970.1 0.90 4.26e-06 1.00e-04
Smp_191910.1 Smp_130970.1 0.92 7.26e-07 4.26e-05
Smp_130970.1 Smp_194840.1 0.95 3.41e-08 5.22e-06
Smp_200110.1 Smp_130970.1 0.91 2.18e-06 9.24e-05
Smp_201330.1 Smp_130970.1 0.96 1.22e-08 2.61e-06
Smp_202830.1 Smp_130970.1 0.95 3.65e-08 5.46e-06
Smp_130970.1 Smp_209060.1 0.92 9.13e-07 5.00e-05
Smp_130970.1 Smp_213420.1 0.96 1.37e-08 2.81e-06