Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_130790.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_130790.1 0 8.99 8.69 10.99 11.23

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_130790.1 SmLINC00376-IBu 0.87 2.42e-05 5.00e-04
Smp_130790.1 SmLINC01171-IBu 0.83 1.00e-04 1.40e-03
Smp_130790.1 SmLINC01733-IBu 0.80 2.00e-04 3.10e-03
Smp_130790.1 SmLINC02255-IBu -0.84 6.04e-05 9.00e-04
Smp_130790.1 SmLINC02657-IBu -0.90 3.58e-06 1.00e-04
Smp_130790.1 SmLINC03236-IBu 0.86 3.24e-05 6.00e-04
Smp_130790.1 SmLINC03693-IBu 0.80 3.00e-04 3.10e-03
Smp_130790.1 SmLINC04521-IBu 0.80 2.00e-04 3.00e-03
Smp_130790.1 SmLINC05990-IBu 0.85 5.98e-05 9.00e-04
Smp_130790.1 SmLINC06535-IBu -0.80 2.00e-04 3.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02579-IBu 0 3.65 3.89 6.08 5.94
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC06740-IBu 0 1.19 0.13 3.75 3.91
Smp_026910.2 0 2.49 2.18 4.84 4.65
Smp_030830.1 0 6.70 6.36 8.23 8.69
Smp_055140.1 0 0.48 -0.65 3.41 3.43
Smp_130790.1 0 8.99 8.69 10.99 11.23
Smp_133650.1 0 1.88 2.30 5.21 5.35
Smp_140650.1 0 1.23 1.76 4.59 4.32
Smp_157140.1 0 9.07 10.07 10.84 11.76
Smp_164570.1 0 2.20 3.12 5.53 5.64
Smp_202690.1 0 2.99 3.08 5.69 6.36

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_130790.1 SmLINC02579-IBu 0.90 3.78e-06 1.00e-04
Smp_130790.1 SmLINC02657-IBu -0.90 3.58e-06 1.00e-04
Smp_130790.1 SmLINC06740-IBu 0.90 2.74e-06 1.00e-04
Smp_130790.1 Smp_026910.2 0.97 4.84e-10 3.20e-07
Smp_130790.1 Smp_030830.1 0.91 2.44e-06 1.00e-04
Smp_130790.1 Smp_055140.1 0.92 6.03e-07 3.74e-05
Smp_130790.1 Smp_133650.1 0.90 3.92e-06 1.00e-04
Smp_130790.1 Smp_140650.1 0.91 1.30e-06 6.42e-05
Smp_130790.1 Smp_157140.1 0.90 4.81e-06 1.00e-04
Smp_130790.1 Smp_164570.1 0.91 1.78e-06 8.03e-05
Smp_130790.1 Smp_202690.1 0.90 3.76e-06 1.00e-04