Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_130580.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_130580.1 0 0.51 2.17 3.94 4.76

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_130580.1 SmLINC00001-IBu 0.85 5.69e-05 9.00e-04
Smp_130580.1 SmLINC00004-IBu 0.87 1.58e-05 3.00e-04
Smp_130580.1 SmLINC00007-IBu 0.82 1.00e-04 2.10e-03
Smp_130580.1 SmLINC00266-IBu 0.91 1.74e-06 7.62e-05
Smp_130580.1 SmLINC00369-IBu 0.86 3.47e-05 6.00e-04
Smp_130580.1 SmLINC00376-IBu 0.83 1.00e-04 1.40e-03
Smp_130580.1 SmLINC00525-IBu 0.89 5.97e-06 1.00e-04
Smp_130580.1 SmLINC00548-IBu 0.81 1.00e-04 2.20e-03
Smp_130580.1 SmLINC00633-IBu 0.85 5.80e-05 9.00e-04
Smp_130580.1 SmLINC01084-IBu 0.90 2.84e-06 1.00e-04
Smp_130580.1 SmLINC01122-IBu 0.82 1.00e-04 2.00e-03
Smp_130580.1 SmLINC01431-IBu 0.89 7.18e-06 2.00e-04
Smp_130580.1 SmLINC01432-IBu 0.86 3.32e-05 6.00e-04
Smp_130580.1 SmLINC01435-IBu 0.82 1.00e-04 2.10e-03
Smp_130580.1 SmLINC01520-IBu 0.84 7.44e-05 1.10e-03
Smp_130580.1 SmLINC01569-IBu 0.82 1.00e-04 1.80e-03
Smp_130580.1 SmLINC02029-IBu 0.81 2.00e-04 2.50e-03
Smp_130580.1 SmLINC02084-IBu 0.92 7.96e-07 4.36e-05
Smp_130580.1 SmLINC02255-IBu -0.87 1.88e-05 4.00e-04
Smp_130580.1 SmLINC02394-IBu 0.82 1.00e-04 2.10e-03
Smp_130580.1 SmLINC02539-IBu 0.87 1.94e-05 4.00e-04
Smp_130580.1 SmLINC02540-IBu 0.83 1.00e-04 1.40e-03
Smp_130580.1 SmLINC02545-IBu 0.92 7.72e-07 4.27e-05
Smp_130580.1 SmLINC02546-IBu 0.86 3.16e-05 6.00e-04
Smp_130580.1 SmLINC02577-IBu 0.83 1.00e-04 1.50e-03
Smp_130580.1 SmLINC02630-IBu -0.84 6.39e-05 1.00e-03
Smp_130580.1 SmLINC02657-IBu -0.85 5.61e-05 9.00e-04
Smp_130580.1 SmLINC03108-IBu 0.85 4.21e-05 7.00e-04
Smp_130580.1 SmLINC03693-IBu 0.80 2.00e-04 2.80e-03
Smp_130580.1 SmLINC03849-IBu -0.83 1.00e-04 1.60e-03
Smp_130580.1 SmLINC03927-IBu 0.96 8.92e-09 1.98e-06
Smp_130580.1 SmLINC04421-IBu 0.93 2.45e-07 1.91e-05
Smp_130580.1 SmLINC04423-IBu 0.81 1.00e-04 2.30e-03
Smp_130580.1 SmLINC04478-IBu 0.80 2.00e-04 2.90e-03
Smp_130580.1 SmLINC04684-IBu 0.81 1.00e-04 2.20e-03
Smp_130580.1 SmLINC05147-IBu 0.82 1.00e-04 1.70e-03
Smp_130580.1 SmLINC05274-IBu -0.81 2.00e-04 2.60e-03
Smp_130580.1 SmLINC05284-IBu -0.84 8.17e-05 1.20e-03
Smp_130580.1 SmLINC05289-IBu 0.87 2.03e-05 4.00e-04
Smp_130580.1 SmLINC05604-IBu 0.92 9.65e-07 5.00e-05
Smp_130580.1 SmLINC06024-IBu 0.86 3.07e-05 5.00e-04
Smp_130580.1 SmLINC06415-IBu 0.82 1.00e-04 1.80e-03
Smp_130580.1 SmLINC06535-IBu -0.84 6.46e-05 1.00e-03
Smp_130580.1 SmLINC06543-IBu 0.82 1.00e-04 2.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_130580.1 0 0.51 2.17 3.94 4.76
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033260.1 Smp_130580.1 0.90 3.59e-06 1.00e-04
Smp_050350.3 Smp_130580.1 0.90 2.62e-06 1.00e-04
Smp_052280.2 Smp_130580.1 0.90 3.40e-06 1.00e-04
Smp_055340.2 Smp_130580.1 0.91 1.70e-06 7.78e-05
Smp_056460.1 Smp_130580.1 0.93 2.19e-07 1.85e-05
Smp_095410.1 Smp_130580.1 0.91 1.37e-06 6.66e-05
Smp_130580.1 Smp_145400.1 0.91 2.41e-06 9.94e-05
Smp_130580.1 Smp_172960.1 0.91 2.37e-06 9.81e-05
Smp_192780.1 Smp_130580.1 0.92 1.16e-06 5.95e-05
Smp_194860.1 Smp_130580.1 0.91 2.34e-06 9.74e-05