Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_130450.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC04953-IBu 0 4.15 3.52 7.42 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06205-IBu 0 0.00 7.73 9.47 9.16
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_130450.1 0 1.37 3.17 5.25 2.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_130450.1 SmLINC00171-IBu 0.81 2.00e-04 2.60e-03
Smp_130450.1 SmLINC00477-IBu 0.87 2.27e-05 4.00e-04
Smp_130450.1 SmLINC00484-IBu 0.81 1.00e-04 2.30e-03
Smp_130450.1 SmLINC00769-IBu 0.89 7.84e-06 2.00e-04
Smp_130450.1 SmLINC01066-IBu 0.87 1.98e-05 4.00e-04
Smp_130450.1 SmLINC01139-IBu 0.82 1.00e-04 1.70e-03
Smp_130450.1 SmLINC01231-IBu 0.85 5.80e-05 9.00e-04
Smp_130450.1 SmLINC01433-IBu 0.83 1.00e-04 1.50e-03
Smp_130450.1 SmLINC01746-IBu 0.83 1.00e-04 1.40e-03
Smp_130450.1 SmLINC01822-IBu 0.87 1.53e-05 3.00e-04
Smp_130450.1 SmLINC02581-IBu 0.83 9.64e-05 1.30e-03
Smp_130450.1 SmLINC03309-IBu 0.83 9.78e-05 1.30e-03
Smp_130450.1 SmLINC03542-IBu 0.80 2.00e-04 2.90e-03
Smp_130450.1 SmLINC03693-IBu 0.81 1.00e-04 2.20e-03
Smp_130450.1 SmLINC04054-IBu 0.91 1.27e-06 6.10e-05
Smp_130450.1 SmLINC04345-IBu 0.86 3.31e-05 6.00e-04
Smp_130450.1 SmLINC04432-IBu 0.84 7.50e-05 1.10e-03
Smp_130450.1 SmLINC04475-IBu 0.91 2.05e-06 8.55e-05
Smp_130450.1 SmLINC04637-IBu 0.83 1.00e-04 1.60e-03
Smp_130450.1 SmLINC04663-IBu 0.84 6.59e-05 1.00e-03
Smp_130450.1 SmLINC04747-IBu 0.91 1.98e-06 8.36e-05
Smp_130450.1 SmLINC04769-IBu 0.92 1.18e-06 5.80e-05
Smp_130450.1 SmLINC04953-IBu 0.83 1.00e-04 1.60e-03
Smp_130450.1 SmLINC05009-IBu 0.92 5.19e-07 3.23e-05
Smp_130450.1 SmLINC05171-IBu 0.92 8.71e-07 4.65e-05
Smp_130450.1 SmLINC05258-IBu 0.80 2.00e-04 3.00e-03
Smp_130450.1 SmLINC05870-IBu 0.82 1.00e-04 1.90e-03
Smp_130450.1 SmLINC06007-IBu 0.90 3.21e-06 1.00e-04
Smp_130450.1 SmLINC06010-IBu 0.86 2.94e-05 5.00e-04
Smp_130450.1 SmLINC06205-IBu 0.84 7.48e-05 1.10e-03
Smp_130450.1 SmLINC06221-IBu 0.85 4.37e-05 7.00e-04
Smp_130450.1 SmLINC06418-IBu 0.85 5.01e-05 8.00e-04
Smp_130450.1 SmLINC06444-IBu 0.81 1.00e-04 2.20e-03
Smp_130450.1 SmLINC06449-IBu 0.87 2.41e-05 5.00e-04
Smp_130450.1 SmLINC06536-IBu 0.89 6.32e-06 1.00e-04
Smp_130450.1 SmLINC06538-IBu 0.81 2.00e-04 2.60e-03
Smp_130450.1 SmLINC06543-IBu 0.80 2.00e-04 3.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_130450.1 0 1.37 3.17 5.25 2.70
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_200750.1 0 1.72 7.25 10.11 8.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_130450.1 Smp_017610.1 0.93 4.79e-07 3.18e-05
Smp_130450.1 Smp_084270.1 0.91 2.00e-06 8.70e-05
Smp_130450.1 Smp_125200.1 0.90 4.47e-06 1.00e-04
Smp_130450.1 Smp_128510.1 0.93 2.06e-07 1.77e-05
Smp_160360.1 Smp_130450.1 0.90 3.71e-06 1.00e-04
Smp_163940.1 Smp_130450.1 0.90 3.11e-06 1.00e-04
Smp_130450.1 Smp_175020.1 0.93 2.00e-07 1.74e-05
Smp_130450.1 Smp_200750.1 0.92 1.15e-06 5.90e-05