Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_130420.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
Smp_130420.1 0 -0.24 -2.28 -5.10 -3.38

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_130420.1 SmLINC00554-IBu 0.89 8.31e-06 2.00e-04
Smp_130420.1 SmLINC00556-IBu 0.80 2.00e-04 3.10e-03
Smp_130420.1 SmLINC00893-IBu 0.80 3.00e-04 3.30e-03
Smp_130420.1 SmLINC04271-IBu 0.81 2.00e-04 2.50e-03
Smp_130420.1 SmLINC05274-IBu 0.89 7.64e-06 2.00e-04
Smp_130420.1 SmLINC05284-IBu 0.83 1.00e-04 1.40e-03