Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_130370.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
Smp_130370.1 0 1.48 0.26 3.67 5.50

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_130370.1 SmLINC00001-IBu 0.84 5.99e-05 9.00e-04
Smp_130370.1 SmLINC00004-IBu 0.86 2.73e-05 5.00e-04
Smp_130370.1 SmLINC00007-IBu 0.89 8.06e-06 2.00e-04
Smp_130370.1 SmLINC00525-IBu 0.83 1.00e-04 1.40e-03
Smp_130370.1 SmLINC01520-IBu 0.94 1.20e-07 1.17e-05
Smp_130370.1 SmLINC02029-IBu 0.93 3.61e-07 2.50e-05
Smp_130370.1 SmLINC02376-IBu 0.81 1.00e-04 2.30e-03
Smp_130370.1 SmLINC02539-IBu 0.92 1.08e-06 5.42e-05
Smp_130370.1 SmLINC02540-IBu 0.87 1.84e-05 4.00e-04
Smp_130370.1 SmLINC02545-IBu 0.90 3.02e-06 1.00e-04
Smp_130370.1 SmLINC02577-IBu 0.91 1.57e-06 7.08e-05
Smp_130370.1 SmLINC02776-IBu 0.84 7.88e-05 1.10e-03
Smp_130370.1 SmLINC02783-IBu 0.86 2.59e-05 5.00e-04
Smp_130370.1 SmLINC02786-IBu 0.91 2.07e-06 8.63e-05
Smp_130370.1 SmLINC03326-IBu 0.81 2.00e-04 2.50e-03
Smp_130370.1 SmLINC03658-IBu 0.91 2.37e-06 9.49e-05
Smp_130370.1 SmLINC03927-IBu 0.85 4.81e-05 8.00e-04
Smp_130370.1 SmLINC04235-IBu 0.87 2.02e-05 4.00e-04
Smp_130370.1 SmLINC04237-IBu 0.82 1.00e-04 1.80e-03
Smp_130370.1 SmLINC04421-IBu 0.89 7.10e-06 2.00e-04
Smp_130370.1 SmLINC04896-IBu 0.93 3.80e-07 2.59e-05
Smp_130370.1 SmLINC05289-IBu 0.84 6.04e-05 9.00e-04
Smp_130370.1 SmLINC05404-IBu 0.92 1.17e-06 5.76e-05
Smp_130370.1 SmLINC05604-IBu 0.93 2.52e-07 1.95e-05
Smp_130370.1 SmLINC05684-IBu 0.91 2.31e-06 9.31e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_130370.1 0 1.48 0.26 3.67 5.50
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_130370.1 Smp_037720.1 0.96 6.87e-09 1.78e-06
Smp_041540.1 Smp_130370.1 0.93 3.65e-07 2.64e-05
Smp_130370.1 Smp_070540.1 0.93 1.98e-07 1.73e-05
Smp_130370.1 Smp_105450.2 0.90 4.57e-06 1.00e-04
Smp_130370.1 Smp_130100.1 0.90 4.64e-06 1.00e-04
Smp_136730.1 Smp_130370.1 0.90 2.86e-06 1.00e-04
Smp_137810.1 Smp_130370.1 0.92 5.34e-07 3.44e-05
Smp_140720.1 Smp_130370.1 0.94 1.22e-07 1.24e-05
Smp_130370.1 Smp_187140.1 0.90 4.65e-06 1.00e-04
Smp_196830.1 Smp_130370.1 0.93 3.86e-07 2.74e-05
Smp_203030.1 Smp_130370.1 0.90 3.29e-06 1.00e-04