Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_129930.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03406-IBu 0 4.88 2.89 -1.93 3.48
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
SmLINC05888-IBu 0 4.50 1.82 -0.36 -2.39
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
SmLINC06669-IBu 0 8.70 4.94 4.70 6.60
Smp_129930.1 0 7.26 0.00 0.00 0.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_129930.1 SmLINC00893-IBu 0.82 1.00e-04 1.80e-03
Smp_129930.1 SmLINC01486-IBu 0.81 2.00e-04 2.30e-03
Smp_129930.1 SmLINC03362-IBu 0.86 3.71e-05 6.00e-04
Smp_129930.1 SmLINC03406-IBu 0.81 2.00e-04 2.40e-03
Smp_129930.1 SmLINC04075-IBu 0.88 1.35e-05 3.00e-04
Smp_129930.1 SmLINC04178-IBu 0.87 1.66e-05 3.00e-04
Smp_129930.1 SmLINC04940-IBu 0.94 1.25e-07 1.20e-05
Smp_129930.1 SmLINC05888-IBu 0.87 2.38e-05 4.00e-04
Smp_129930.1 SmLINC06210-IBu 0.82 1.00e-04 2.00e-03
Smp_129930.1 SmLINC06669-IBu 0.83 9.86e-05 1.40e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_123000.1 0 0.49 -5.87 -12.08 -12.08
Smp_129930.1 0 7.26 0.00 0.00 0.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_129930.1 Smp_123000.1 0.9 4.69e-06 1.00e-04