Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_129780.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_129780.1 0 0.66 -0.31 -3.14 -4.36

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_129780.1 SmLINC00372-IBu 0.81 1.00e-04 2.10e-03
Smp_129780.1 SmLINC01316-IBu 0.87 2.39e-05 5.00e-04
Smp_129780.1 SmLINC01429-IBu 0.80 2.00e-04 3.10e-03
Smp_129780.1 SmLINC01979-IBu 0.87 1.75e-05 3.00e-04
Smp_129780.1 SmLINC02646-IBu 0.87 1.52e-05 3.00e-04
Smp_129780.1 SmLINC03111-IBu 0.84 8.72e-05 1.20e-03
Smp_129780.1 SmLINC04074-IBu 0.89 7.99e-06 2.00e-04
Smp_129780.1 SmLINC06646-IBu 0.97 1.87e-10 1.59e-07
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_129780.1 0 0.66 -0.31 -3.14 -4.36

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_129780.1 Smp_017650.1 0.93 4.03e-07 2.83e-05
Smp_129780.1 Smp_059340.3 0.96 5.56e-09 1.54e-06
Smp_059530.1 Smp_129780.1 0.93 4.84e-07 3.21e-05
Smp_129780.1 Smp_083380.2 0.92 6.20e-07 3.82e-05
Smp_103540.1 Smp_129780.1 0.90 4.52e-06 1.00e-04