Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_129610.1 Data

Correlation between Smp_129610.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_129610.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_129610.1 0 -3.45 -4.74 -3.50 -3.64

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_129610.1 SmLINC04957-IBu 0.93 4.56e-07 2.95e-05
Smp_129610.1 SmLINC05989-IBu 0.81 2.00e-04 2.30e-03
Smp_129610.1 SmLINC06128-IBu 0.82 1.00e-04 2.00e-03
Smp_129610.1 SmLINC06890-IBu 0.95 2.12e-08 3.55e-06
Smp_129610.1 SmLINC06903-IBu 0.89 6.76e-06 2.00e-04

Correlation between Smp_129610.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_032980.1 0 -3.49 -10.60 -12.19 -12.01
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_055770.1 0 -5.16 -5.96 -12.28 -12.28
Smp_061940.2 0 -3.16 -5.22 -11.34 -15.89
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_129610.1 0 -3.45 -4.74 -3.50 -3.64
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_129610.1 Smp_032980.1 0.94 9.73e-08 1.06e-05
Smp_129610.1 Smp_043670.2 0.91 1.22e-06 6.17e-05
Smp_129610.1 Smp_055770.1 0.97 2.70e-10 2.20e-07
Smp_129610.1 Smp_061940.2 0.91 1.52e-06 7.18e-05
Smp_129610.1 Smp_079970.1 0.98 2.15e-11 4.43e-08
Smp_129610.1 Smp_152780.1 0.97 8.02e-10 4.42e-07
Smp_129610.1 Smp_182890.1 0.90 3.61e-06 1.00e-04
Smp_129610.1 Smp_206200.1 0.91 2.17e-06 9.21e-05