Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_129110.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
Smp_129110.1 0 7.10 10.62 11.56 10.18

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_129110.1 SmLINC00769-IBu 0.81 1.00e-04 2.20e-03
Smp_129110.1 SmLINC04054-IBu 0.81 1.00e-04 2.20e-03
Smp_129110.1 SmLINC04345-IBu 0.81 1.00e-04 2.20e-03
Smp_129110.1 SmLINC04432-IBu 0.82 1.00e-04 1.80e-03
Smp_129110.1 SmLINC04475-IBu 0.90 4.03e-06 1.00e-04
Smp_129110.1 SmLINC04747-IBu 0.82 1.00e-04 1.90e-03
Smp_129110.1 SmLINC04769-IBu 0.84 8.33e-05 1.20e-03
Smp_129110.1 SmLINC05171-IBu 0.80 2.00e-04 2.90e-03
Smp_129110.1 SmLINC05632-IBu 0.88 1.19e-05 3.00e-04
Smp_129110.1 SmLINC05870-IBu 0.87 1.75e-05 3.00e-04
Smp_129110.1 SmLINC06010-IBu 0.85 4.69e-05 8.00e-04
Smp_129110.1 SmLINC06444-IBu 0.82 1.00e-04 2.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01928-IBu 0 0.28 3.49 4.91 3.93
SmLINC02005-IBu 0 0.60 3.27 6.38 5.34
SmLINC02150-IBu 0 1.44 4.04 5.34 4.14
SmLINC02167-IBu 0 0.62 2.80 4.68 2.59
SmLINC02710-IBu 0 5.03 7.39 10.03 8.68
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC05545-IBu 0 3.35 4.91 7.54 6.40
SmLINC07008-IBu 0 4.06 6.76 8.59 7.74
Smp_000160.1 0 1.24 3.74 4.86 3.54
Smp_026930.1 0 0.83 2.85 4.55 3.87
Smp_035260.1 0 0.25 4.25 5.82 4.32
Smp_041210.1 0 0.00 6.71 9.74 8.02
Smp_047460.1 0 0.61 3.69 5.64 3.63
Smp_048380.1 0 -0.03 3.50 5.63 4.71
Smp_052990.1 0 -0.52 2.98 4.39 4.07
Smp_068510.1 0 0.65 2.92 5.59 4.35
Smp_070380.1 0 2.49 3.20 5.35 4.60
Smp_072450.1 0 -0.23 2.73 4.55 2.10
Smp_077720.1 0 2.95 5.46 6.14 5.37
Smp_077850.1 0 1.75 4.77 5.81 4.20
Smp_079480.1 0 2.09 4.38 6.25 5.24
Smp_091820.1 0 0.31 2.14 4.25 2.20
Smp_096410.1 0 0.05 1.45 4.24 2.22
Smp_108610.1 0 1.01 4.29 5.85 3.57
Smp_124740.1 0 1.26 3.69 5.89 4.22
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_128220.1 0 1.22 3.66 5.71 4.61
Smp_128760.1 0 0.19 3.77 6.17 4.68
Smp_129110.1 0 7.10 10.62 11.56 10.18
Smp_129810.1 0 1.12 3.00 4.80 2.57
Smp_130260.1 0 1.47 5.75 6.84 6.08
Smp_132320.1 0 1.11 2.81 4.65 3.88
Smp_132440.2 0 4.00 6.60 8.31 7.55
Smp_140860.1 0 0.37 2.98 4.66 3.61
Smp_141280.1 0 -0.60 1.79 3.78 2.89
Smp_141290.4 0 1.30 3.85 5.02 4.35
Smp_143260.1 0 1.86 3.76 5.70 4.66
Smp_143300.1 0 0.21 3.22 4.45 3.87
Smp_145200.1 0 1.22 4.73 6.12 5.37
Smp_146050.1 0 0.80 2.62 5.57 3.65
Smp_146720.1 0 0.62 4.79 4.89 4.19
Smp_147190.1 0 -3.38 3.81 5.52 3.13
Smp_148640.1 0 0.05 6.07 6.14 5.86
Smp_149390.1 0 -0.41 3.17 4.26 3.00
Smp_151620.1 0 1.79 3.08 5.28 3.22
Smp_153440.1 0 1.73 3.66 5.42 3.65
Smp_155240.1 0 -0.23 2.34 4.47 3.38
Smp_157620.1 0 -1.34 2.10 4.24 3.31
Smp_158880.1 0 1.21 5.25 6.12 5.41
Smp_161500.1 0 0.56 3.35 4.98 3.32
Smp_164670.1 0 2.08 3.82 5.29 4.83
Smp_165150.1 0 -2.23 2.21 3.32 3.30
Smp_167440.1 0 0.66 3.65 5.64 4.36
Smp_168980.1 0 2.54 4.65 5.85 4.62
Smp_172500.1 0 -0.00 3.03 5.12 4.90
Smp_173510.1 0 -1.66 2.86 4.06 3.37
Smp_175390.1 0 1.03 3.77 5.71 4.93
Smp_197860.1 0 1.56 3.14 5.45 2.31
Smp_198930.1 0 -0.04 2.86 4.48 1.94
Smp_201140.1 0 -2.22 3.92 6.64 5.01
Smp_203390.1 0 1.08 3.39 4.79 4.84
Smp_204020.1 0 2.83 6.79 7.81 6.89
Smp_204230.1 0 1.81 5.30 7.10 6.01

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_129110.1 SmLINC01928-IBu 0.91 2.19e-06 9.29e-05
Smp_129110.1 SmLINC02005-IBu 0.92 1.10e-06 5.73e-05
Smp_129110.1 SmLINC02150-IBu 0.92 7.49e-07 4.35e-05
Smp_129110.1 SmLINC02167-IBu 0.93 4.19e-07 2.90e-05
Smp_129110.1 SmLINC02710-IBu 0.91 1.24e-06 6.23e-05
Smp_129110.1 SmLINC04475-IBu 0.90 4.03e-06 1.00e-04
Smp_129110.1 SmLINC05545-IBu 0.90 2.63e-06 1.00e-04
Smp_129110.1 SmLINC07008-IBu 0.90 3.50e-06 1.00e-04
Smp_129110.1 Smp_000160.1 0.94 6.75e-08 8.28e-06
Smp_026930.1 Smp_129110.1 0.92 6.20e-07 3.82e-05
Smp_129110.1 Smp_035260.1 0.91 1.71e-06 7.81e-05
Smp_129110.1 Smp_041210.1 0.94 1.91e-07 1.69e-05
Smp_129110.1 Smp_047460.1 0.92 1.19e-06 6.04e-05
Smp_129110.1 Smp_048380.1 0.92 1.06e-06 5.58e-05
Smp_129110.1 Smp_052990.1 0.92 9.24e-07 5.04e-05
Smp_068510.1 Smp_129110.1 0.94 1.73e-07 1.57e-05
Smp_129110.1 Smp_070380.1 0.90 4.47e-06 1.00e-04
Smp_129110.1 Smp_072450.1 0.93 4.40e-07 3.00e-05
Smp_129110.1 Smp_077720.1 0.90 3.20e-06 1.00e-04
Smp_129110.1 Smp_077850.1 0.93 2.08e-07 1.78e-05
Smp_079480.1 Smp_129110.1 0.94 6.94e-08 8.44e-06
Smp_129110.1 Smp_091820.1 0.90 3.37e-06 1.00e-04
Smp_129110.1 Smp_096410.1 0.93 2.28e-07 1.91e-05
Smp_129110.1 Smp_108610.1 0.94 1.71e-07 1.56e-05
Smp_129110.1 Smp_124740.1 0.92 1.11e-06 5.76e-05
Smp_129110.1 Smp_125200.1 0.90 3.32e-06 1.00e-04
Smp_129110.1 Smp_128220.1 0.92 6.15e-07 3.79e-05
Smp_129110.1 Smp_128760.1 0.92 9.91e-07 5.30e-05
Smp_129110.1 Smp_129810.1 0.93 3.02e-07 2.31e-05
Smp_129110.1 Smp_130260.1 0.91 2.01e-06 8.73e-05
Smp_132320.1 Smp_129110.1 0.90 3.72e-06 1.00e-04
Smp_129110.1 Smp_132440.2 0.94 1.04e-07 1.11e-05
Smp_129110.1 Smp_140860.1 0.94 1.22e-07 1.24e-05
Smp_129110.1 Smp_141280.1 0.92 6.08e-07 3.76e-05
Smp_129110.1 Smp_141290.4 0.93 3.02e-07 2.32e-05
Smp_129110.1 Smp_143260.1 0.91 2.45e-06 1.00e-04
Smp_129110.1 Smp_143300.1 0.90 3.51e-06 1.00e-04
Smp_129110.1 Smp_145200.1 0.94 1.79e-07 1.61e-05
Smp_146050.1 Smp_129110.1 0.92 9.45e-07 5.12e-05
Smp_129110.1 Smp_146720.1 0.90 3.29e-06 1.00e-04
Smp_129110.1 Smp_147190.1 0.96 8.00e-09 1.97e-06
Smp_129110.1 Smp_148640.1 0.91 2.03e-06 8.80e-05
Smp_129110.1 Smp_149390.1 0.93 3.09e-07 2.35e-05
Smp_129110.1 Smp_151620.1 0.90 3.32e-06 1.00e-04
Smp_129110.1 Smp_153440.1 0.91 1.66e-06 7.64e-05
Smp_129110.1 Smp_155240.1 0.91 1.37e-06 6.69e-05
Smp_157620.1 Smp_129110.1 0.91 2.38e-06 9.84e-05
Smp_129110.1 Smp_158880.1 0.94 1.24e-07 1.25e-05
Smp_129110.1 Smp_161500.1 0.93 3.98e-07 2.80e-05
Smp_129110.1 Smp_164670.1 0.94 1.77e-07 1.60e-05
Smp_129110.1 Smp_165150.1 0.91 1.95e-06 8.54e-05
Smp_129110.1 Smp_167440.1 0.90 4.14e-06 1.00e-04
Smp_168980.1 Smp_129110.1 0.96 1.33e-08 2.76e-06
Smp_129110.1 Smp_172500.1 0.90 4.17e-06 1.00e-04
Smp_129110.1 Smp_173510.1 0.91 1.37e-06 6.69e-05
Smp_129110.1 Smp_175390.1 0.90 3.37e-06 1.00e-04
Smp_197860.1 Smp_129110.1 0.90 3.34e-06 1.00e-04
Smp_129110.1 Smp_198930.1 0.93 3.69e-07 2.66e-05
Smp_129110.1 Smp_201140.1 0.93 2.35e-07 1.94e-05
Smp_129110.1 Smp_203390.1 0.90 3.88e-06 1.00e-04
Smp_129110.1 Smp_204020.1 0.96 5.25e-09 1.49e-06
Smp_129110.1 Smp_204230.1 0.92 6.13e-07 3.78e-05