Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_128500.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_128500.1 0 2.90 4.50 6.38 6.91

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_128500.1 SmLINC00548-IBu 0.84 7.51e-05 1.10e-03
Smp_128500.1 SmLINC00633-IBu 0.80 3.00e-04 3.40e-03
Smp_128500.1 SmLINC01084-IBu 0.82 1.00e-04 1.80e-03
Smp_128500.1 SmLINC01122-IBu 0.81 2.00e-04 2.30e-03
Smp_128500.1 SmLINC01171-IBu 0.80 2.00e-04 3.00e-03
Smp_128500.1 SmLINC01431-IBu 0.85 4.36e-05 7.00e-04
Smp_128500.1 SmLINC01538-IBu 0.85 4.61e-05 8.00e-04
Smp_128500.1 SmLINC01569-IBu 0.82 1.00e-04 1.80e-03
Smp_128500.1 SmLINC01733-IBu 0.90 4.78e-06 1.00e-04
Smp_128500.1 SmLINC02255-IBu -0.85 5.40e-05 9.00e-04
Smp_128500.1 SmLINC02546-IBu 0.83 1.00e-04 1.40e-03
Smp_128500.1 SmLINC02630-IBu -0.84 6.93e-05 1.00e-03
Smp_128500.1 SmLINC02657-IBu -0.83 1.00e-04 1.60e-03
Smp_128500.1 SmLINC03309-IBu 0.81 1.00e-04 2.30e-03
Smp_128500.1 SmLINC04423-IBu 0.85 5.77e-05 9.00e-04
Smp_128500.1 SmLINC04432-IBu 0.89 5.07e-06 1.00e-04
Smp_128500.1 SmLINC04475-IBu 0.80 3.00e-04 3.30e-03
Smp_128500.1 SmLINC04478-IBu 0.83 1.00e-04 1.50e-03
Smp_128500.1 SmLINC04637-IBu 0.80 2.00e-04 3.00e-03
Smp_128500.1 SmLINC05147-IBu 0.80 2.00e-04 2.90e-03
Smp_128500.1 SmLINC05284-IBu -0.81 2.00e-04 2.40e-03
Smp_128500.1 SmLINC06010-IBu 0.84 8.66e-05 1.20e-03
Smp_128500.1 SmLINC06024-IBu 0.82 1.00e-04 2.00e-03
Smp_128500.1 SmLINC06415-IBu 0.83 1.00e-04 1.60e-03
Smp_128500.1 SmLINC06444-IBu 0.80 2.00e-04 2.80e-03
Smp_128500.1 SmLINC06535-IBu -0.84 7.95e-05 1.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_128500.1 0 2.90 4.50 6.38 6.91
Smp_169670.1 0 0.00 8.19 10.09 10.85

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_128500.1 Smp_055340.2 0.91 1.24e-06 6.21e-05
Smp_128500.1 Smp_169670.1 0.90 4.66e-06 1.00e-04