Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_128460.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC04953-IBu 0 4.15 3.52 7.42 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_128460.1 0 -2.13 0.35 4.85 0.93

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_128460.1 SmLINC00477-IBu 0.88 9.45e-06 2.00e-04
Smp_128460.1 SmLINC00484-IBu 0.91 2.12e-06 8.75e-05
Smp_128460.1 SmLINC00548-IBu 0.84 6.21e-05 1.00e-03
Smp_128460.1 SmLINC00769-IBu 0.97 1.10e-09 5.01e-07
Smp_128460.1 SmLINC01066-IBu 0.81 2.00e-04 2.40e-03
Smp_128460.1 SmLINC01122-IBu 0.81 2.00e-04 2.60e-03
Smp_128460.1 SmLINC01139-IBu 0.91 2.26e-06 9.18e-05
Smp_128460.1 SmLINC01231-IBu 0.83 8.94e-05 1.30e-03
Smp_128460.1 SmLINC01435-IBu 0.84 7.86e-05 1.10e-03
Smp_128460.1 SmLINC01538-IBu 0.88 1.17e-05 2.00e-04
Smp_128460.1 SmLINC01569-IBu 0.83 1.00e-04 1.60e-03
Smp_128460.1 SmLINC01733-IBu 0.84 6.30e-05 1.00e-03
Smp_128460.1 SmLINC01746-IBu 0.87 2.15e-05 4.00e-04
Smp_128460.1 SmLINC01822-IBu 0.82 1.00e-04 2.00e-03
Smp_128460.1 SmLINC03309-IBu 0.89 7.00e-06 2.00e-04
Smp_128460.1 SmLINC03542-IBu 0.86 2.88e-05 5.00e-04
Smp_128460.1 SmLINC03693-IBu 0.82 1.00e-04 2.00e-03
Smp_128460.1 SmLINC04054-IBu 0.95 4.82e-08 6.22e-06
Smp_128460.1 SmLINC04345-IBu 0.98 1.43e-10 1.34e-07
Smp_128460.1 SmLINC04432-IBu 0.86 3.05e-05 5.00e-04
Smp_128460.1 SmLINC04475-IBu 0.90 4.19e-06 1.00e-04
Smp_128460.1 SmLINC04637-IBu 0.95 3.59e-08 5.09e-06
Smp_128460.1 SmLINC04663-IBu 0.94 9.79e-08 1.01e-05
Smp_128460.1 SmLINC04747-IBu 0.98 6.72e-11 8.28e-08
Smp_128460.1 SmLINC04769-IBu 0.90 3.48e-06 1.00e-04
Smp_128460.1 SmLINC04953-IBu 0.93 5.03e-07 3.16e-05
Smp_128460.1 SmLINC05009-IBu 0.87 1.92e-05 4.00e-04
Smp_128460.1 SmLINC05171-IBu 0.90 3.57e-06 1.00e-04
Smp_128460.1 SmLINC06007-IBu 0.82 1.00e-04 2.00e-03
Smp_128460.1 SmLINC06010-IBu 0.94 8.79e-08 9.39e-06
Smp_128460.1 SmLINC06221-IBu 0.84 7.42e-05 1.10e-03
Smp_128460.1 SmLINC06418-IBu 0.83 1.00e-04 1.50e-03
Smp_128460.1 SmLINC06444-IBu 0.94 7.89e-08 8.72e-06
Smp_128460.1 SmLINC06449-IBu 0.88 1.16e-05 2.00e-04
Smp_128460.1 SmLINC06536-IBu 0.83 1.00e-04 1.40e-03
Smp_128460.1 SmLINC06537-IBu 0.95 2.10e-08 3.53e-06
Smp_128460.1 SmLINC06543-IBu 0.82 1.00e-04 1.90e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_128460.1 0 -2.13 0.35 4.85 0.93
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_194960.1 0 0.00 0.00 17.20 15.87
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_197400.1 0 0.00 0.00 10.12 7.45

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_128460.1 Smp_017610.1 0.95 5.60e-08 7.29e-06
Smp_128460.1 Smp_068270.1 0.91 1.42e-06 6.84e-05
Smp_128460.1 Smp_084270.1 0.91 1.63e-06 7.53e-05
Smp_128460.1 Smp_105730.1 0.92 7.01e-07 4.15e-05
Smp_118560.1 Smp_128460.1 0.90 3.75e-06 1.00e-04
Smp_128460.1 Smp_125200.1 0.95 1.58e-08 3.11e-06
Smp_128460.1 Smp_125210.1 0.91 1.26e-06 6.31e-05
Smp_128460.1 Smp_128510.1 0.92 9.53e-07 5.15e-05
Smp_128460.1 Smp_131840.1 0.92 5.68e-07 3.59e-05
Smp_128460.1 Smp_154180.1 0.93 2.95e-07 2.28e-05
Smp_154190.1 Smp_128460.1 0.95 1.98e-08 3.61e-06
Smp_160360.1 Smp_128460.1 0.97 9.93e-10 5.07e-07
Smp_128460.1 Smp_164550.1 0.95 3.81e-08 5.62e-06
Smp_128460.1 Smp_175020.1 0.91 2.21e-06 9.35e-05
Smp_128460.1 Smp_194960.1 0.90 2.75e-06 1.00e-04
Smp_128460.1 Smp_194970.1 0.90 3.47e-06 1.00e-04
Smp_197400.1 Smp_128460.1 0.95 2.99e-08 4.76e-06