Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_128400.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03485-IBu 0 -0.93 -1.24 -9.54 -9.54
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_128400.1 0 -0.10 -1.06 -4.61 -6.71

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_128400.1 SmLINC00556-IBu 0.81 2.00e-04 2.30e-03
Smp_128400.1 SmLINC00787-IBu 0.80 3.00e-04 3.30e-03
Smp_128400.1 SmLINC01429-IBu 0.86 2.52e-05 5.00e-04
Smp_128400.1 SmLINC01979-IBu 0.93 3.67e-07 2.53e-05
Smp_128400.1 SmLINC02646-IBu 0.86 3.60e-05 6.00e-04
Smp_128400.1 SmLINC03111-IBu 0.87 2.44e-05 5.00e-04
Smp_128400.1 SmLINC03116-IBu 0.82 1.00e-04 1.80e-03
Smp_128400.1 SmLINC03485-IBu 0.86 3.89e-05 7.00e-04
Smp_128400.1 SmLINC06646-IBu 0.83 9.07e-05 1.30e-03