Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_128030.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_128030.1 0 1.83 -1.83 5.23 5.38

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_128030.1 SmLINC00171-IBu 0.92 5.38e-07 3.31e-05
Smp_128030.1 SmLINC00369-IBu 0.83 1.00e-04 1.50e-03
Smp_128030.1 SmLINC00376-IBu 0.81 2.00e-04 2.70e-03
Smp_128030.1 SmLINC00477-IBu 0.85 4.94e-05 8.00e-04
Smp_128030.1 SmLINC00525-IBu 0.81 2.00e-04 2.40e-03
Smp_128030.1 SmLINC00548-IBu 0.93 2.61e-07 2.00e-05
Smp_128030.1 SmLINC00633-IBu 0.90 4.18e-06 1.00e-04
Smp_128030.1 SmLINC00769-IBu 0.82 1.00e-04 1.80e-03
Smp_128030.1 SmLINC01066-IBu 0.90 3.20e-06 1.00e-04
Smp_128030.1 SmLINC01084-IBu 0.83 1.00e-04 1.40e-03
Smp_128030.1 SmLINC01139-IBu 0.90 3.63e-06 1.00e-04
Smp_128030.1 SmLINC01171-IBu 0.80 2.00e-04 2.80e-03
Smp_128030.1 SmLINC01231-IBu 0.91 1.80e-06 7.82e-05
Smp_128030.1 SmLINC01431-IBu 0.91 1.69e-06 7.46e-05
Smp_128030.1 SmLINC01433-IBu 0.85 5.82e-05 9.00e-04
Smp_128030.1 SmLINC01435-IBu 0.83 1.00e-04 1.40e-03
Smp_128030.1 SmLINC01538-IBu 0.90 2.58e-06 1.00e-04
Smp_128030.1 SmLINC01733-IBu 0.86 3.92e-05 7.00e-04
Smp_128030.1 SmLINC01746-IBu 0.89 6.19e-06 1.00e-04
Smp_128030.1 SmLINC01822-IBu 0.81 1.00e-04 2.20e-03
Smp_128030.1 SmLINC02084-IBu 0.89 6.76e-06 2.00e-04
Smp_128030.1 SmLINC02546-IBu 0.96 1.15e-08 2.34e-06
Smp_128030.1 SmLINC03108-IBu 0.87 1.87e-05 4.00e-04
Smp_128030.1 SmLINC03309-IBu 0.91 1.73e-06 7.58e-05
Smp_128030.1 SmLINC03693-IBu 0.89 8.10e-06 2.00e-04
Smp_128030.1 SmLINC03927-IBu 0.83 1.00e-04 1.50e-03
Smp_128030.1 SmLINC04054-IBu 0.80 2.00e-04 2.80e-03
Smp_128030.1 SmLINC04432-IBu 0.89 7.84e-06 2.00e-04
Smp_128030.1 SmLINC04475-IBu 0.84 6.52e-05 1.00e-03
Smp_128030.1 SmLINC04663-IBu 0.83 9.28e-05 1.30e-03
Smp_128030.1 SmLINC04684-IBu 0.96 1.30e-08 2.56e-06
Smp_128030.1 SmLINC05009-IBu 0.80 2.00e-04 3.10e-03
Smp_128030.1 SmLINC05147-IBu 0.91 1.27e-06 6.09e-05
Smp_128030.1 SmLINC05171-IBu 0.86 3.67e-05 6.00e-04
Smp_128030.1 SmLINC05258-IBu 0.92 5.92e-07 3.54e-05
Smp_128030.1 SmLINC06007-IBu 0.80 2.00e-04 2.70e-03
Smp_128030.1 SmLINC06010-IBu 0.82 1.00e-04 2.00e-03
Smp_128030.1 SmLINC06221-IBu 0.87 2.11e-05 4.00e-04
Smp_128030.1 SmLINC06415-IBu 0.84 7.65e-05 1.10e-03
Smp_128030.1 SmLINC06418-IBu 0.85 4.51e-05 7.00e-04
Smp_128030.1 SmLINC06444-IBu 0.83 1.00e-04 1.60e-03
Smp_128030.1 SmLINC06449-IBu 0.83 1.00e-04 1.60e-03
Smp_128030.1 SmLINC06536-IBu 0.93 3.98e-07 2.68e-05
Smp_128030.1 SmLINC06543-IBu 0.87 2.23e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_031770.10 0 0.00 0.00 10.09 10.31
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_128030.1 0 1.83 -1.83 5.23 5.38
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_170280.1 0 2.81 5.87 10.21 9.37

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_128030.1 Smp_031770.10 0.90 2.80e-06 1.00e-04
Smp_128030.1 Smp_034980.2 0.90 2.61e-06 1.00e-04
Smp_128030.1 Smp_058660.1 0.93 4.01e-07 2.82e-05
Smp_137320.1 Smp_128030.1 0.91 1.73e-06 7.87e-05
Smp_128030.1 Smp_170280.1 0.90 4.02e-06 1.00e-04