Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_127790.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_127790.1 0 -0.50 1.35 -1.97 -4.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_127790.1 SmLINC00372-IBu 0.93 2.45e-07 1.91e-05
Smp_127790.1 SmLINC01316-IBu 0.80 3.00e-04 3.40e-03
Smp_127790.1 SmLINC02026-IBu 0.84 7.78e-05 1.10e-03
Smp_127790.1 SmLINC04430-IBu 0.94 7.15e-08 8.15e-06
Smp_127790.1 SmLINC04947-IBu 0.92 1.04e-06 5.31e-05
Smp_127790.1 SmLINC05559-IBu 0.97 2.16e-09 7.77e-07
Smp_127790.1 SmLINC06700-IBu 0.84 7.07e-05 1.00e-03
Smp_127790.1 SmLINC06836-IBu 0.94 1.49e-07 1.35e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_127790.1 0 -0.50 1.35 -1.97 -4.33
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_194060.1 0 0.19 1.68 -10.58 -10.66

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_127790.1 Smp_010140.2 0.97 9.33e-10 4.87e-07
Smp_098890.1 Smp_127790.1 0.91 2.43e-06 1.00e-04
Smp_127790.1 Smp_138080.1 0.95 2.01e-08 3.65e-06
Smp_127790.1 Smp_159070.3 0.94 1.05e-07 1.12e-05
Smp_127790.1 Smp_194060.1 0.90 3.54e-06 1.00e-04