Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_126470.1 Data

Correlation between Smp_126470.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_126470.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_126470.1 0 1.38 2.58 4.77 5.50

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_126470.1 SmLINC00001-IBu 0.85 5.37e-05 8.00e-04
Smp_126470.1 SmLINC00004-IBu 0.86 3.74e-05 6.00e-04
Smp_126470.1 SmLINC00037-IBu -0.81 1.00e-04 2.20e-03
Smp_126470.1 SmLINC00133-IBu -0.80 3.00e-04 3.30e-03
Smp_126470.1 SmLINC00266-IBu 0.84 8.55e-05 1.20e-03
Smp_126470.1 SmLINC00282-IBu -0.84 6.20e-05 9.00e-04
Smp_126470.1 SmLINC00369-IBu 0.88 1.47e-05 3.00e-04
Smp_126470.1 SmLINC00376-IBu 0.87 1.64e-05 3.00e-04
Smp_126470.1 SmLINC00525-IBu 0.82 1.00e-04 2.00e-03
Smp_126470.1 SmLINC00548-IBu 0.80 2.00e-04 2.90e-03
Smp_126470.1 SmLINC00633-IBu 0.80 3.00e-04 3.20e-03
Smp_126470.1 SmLINC01084-IBu 0.87 1.96e-05 4.00e-04
Smp_126470.1 SmLINC01122-IBu 0.83 1.00e-04 1.50e-03
Smp_126470.1 SmLINC01431-IBu 0.89 5.33e-06 1.00e-04
Smp_126470.1 SmLINC01432-IBu 0.80 3.00e-04 3.20e-03
Smp_126470.1 SmLINC01538-IBu 0.80 3.00e-04 3.20e-03
Smp_126470.1 SmLINC01569-IBu 0.82 1.00e-04 1.80e-03
Smp_126470.1 SmLINC01637-IBu -0.84 6.38e-05 1.00e-03
Smp_126470.1 SmLINC01733-IBu 0.84 8.10e-05 1.20e-03
Smp_126470.1 SmLINC01746-IBu 0.80 3.00e-04 3.30e-03
Smp_126470.1 SmLINC02084-IBu 0.88 8.96e-06 2.00e-04
Smp_126470.1 SmLINC02255-IBu -0.95 2.34e-08 3.79e-06
Smp_126470.1 SmLINC02394-IBu 0.84 8.71e-05 1.20e-03
Smp_126470.1 SmLINC02539-IBu 0.80 3.00e-04 3.20e-03
Smp_126470.1 SmLINC02546-IBu 0.85 5.89e-05 9.00e-04
Smp_126470.1 SmLINC02630-IBu -0.94 1.83e-07 1.55e-05
Smp_126470.1 SmLINC02657-IBu -0.92 5.19e-07 3.23e-05
Smp_126470.1 SmLINC03108-IBu 0.80 2.00e-04 3.10e-03
Smp_126470.1 SmLINC03693-IBu 0.82 1.00e-04 1.90e-03
Smp_126470.1 SmLINC03769-IBu -0.83 1.00e-04 1.50e-03
Smp_126470.1 SmLINC03849-IBu -0.82 1.00e-04 1.80e-03
Smp_126470.1 SmLINC03927-IBu 0.85 5.10e-05 8.00e-04
Smp_126470.1 SmLINC03930-IBu -0.85 5.44e-05 9.00e-04
Smp_126470.1 SmLINC04421-IBu 0.88 1.15e-05 2.00e-04
Smp_126470.1 SmLINC04423-IBu 0.81 2.00e-04 2.40e-03
Smp_126470.1 SmLINC04432-IBu 0.80 2.00e-04 2.80e-03
Smp_126470.1 SmLINC04478-IBu 0.80 3.00e-04 3.20e-03
Smp_126470.1 SmLINC04521-IBu 0.82 1.00e-04 2.00e-03
Smp_126470.1 SmLINC04684-IBu 0.81 1.00e-04 2.20e-03
Smp_126470.1 SmLINC05147-IBu 0.81 1.00e-04 2.20e-03
Smp_126470.1 SmLINC05258-IBu 0.80 2.00e-04 3.00e-03
Smp_126470.1 SmLINC05284-IBu -0.90 2.95e-06 1.00e-04
Smp_126470.1 SmLINC05289-IBu 0.84 8.54e-05 1.20e-03
Smp_126470.1 SmLINC05604-IBu 0.83 9.80e-05 1.30e-03
Smp_126470.1 SmLINC05716-IBu -0.80 3.00e-04 3.30e-03
Smp_126470.1 SmLINC05720-IBu -0.81 1.00e-04 2.30e-03
Smp_126470.1 SmLINC05989-IBu -0.80 2.00e-04 2.90e-03
Smp_126470.1 SmLINC06024-IBu 0.83 1.00e-04 1.50e-03
Smp_126470.1 SmLINC06128-IBu -0.84 8.65e-05 1.20e-03
Smp_126470.1 SmLINC06221-IBu 0.82 1.00e-04 1.90e-03
Smp_126470.1 SmLINC06535-IBu -0.93 4.58e-07 2.96e-05

Correlation between Smp_126470.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_126470.1 0 1.38 2.58 4.77 5.50
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_160090.2 0 9.28 9.75 11.69 12.26
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_172510.2 0 9.12 10.77 11.45 12.33

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035090.2 Smp_126470.1 -0.92 9.96e-07 5.32e-05
Smp_036270.4 Smp_126470.1 -0.90 3.53e-06 1.00e-04
Smp_050350.3 Smp_126470.1 0.91 1.34e-06 6.56e-05
Smp_052280.2 Smp_126470.1 0.92 8.38e-07 4.71e-05
Smp_055340.2 Smp_126470.1 0.97 1.02e-09 5.17e-07
Smp_056460.1 Smp_126470.1 0.90 4.21e-06 1.00e-04
Smp_126470.1 Smp_079420.1 0.90 3.34e-06 1.00e-04
Smp_137000.2 Smp_126470.1 0.91 2.43e-06 1.00e-04
Smp_160090.2 Smp_126470.1 0.92 8.55e-07 4.78e-05
Smp_160230.1 Smp_126470.1 -0.91 1.33e-06 6.53e-05
Smp_169670.1 Smp_126470.1 0.91 1.38e-06 6.72e-05
Smp_172510.2 Smp_126470.1 0.90 4.72e-06 1.00e-04