Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_126440.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_126440.1 0 -0.22 -1.00 -4.55 -4.91

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_126440.1 SmLINC04271-IBu 0.78 5.00e-04 3.70e-03
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC03485-IBu 0 -0.93 -1.24 -9.54 -9.54
SmLINC03486-IBu 0 0.84 -0.08 -7.36 -7.36
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_126440.1 0 -0.22 -1.00 -4.55 -4.91

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_126440.1 SmLINC00001-IBu -0.81 2.00e-04 2.50e-03
Smp_126440.1 SmLINC00004-IBu -0.83 1.00e-04 1.50e-03
Smp_126440.1 SmLINC00294-IBu 0.85 3.96e-05 7.00e-04
Smp_126440.1 SmLINC00369-IBu -0.82 1.00e-04 1.80e-03
Smp_126440.1 SmLINC00525-IBu -0.89 7.77e-06 2.00e-04
Smp_126440.1 SmLINC00556-IBu 0.87 2.15e-05 4.00e-04
Smp_126440.1 SmLINC01084-IBu -0.91 1.48e-06 6.80e-05
Smp_126440.1 SmLINC01431-IBu -0.85 5.29e-05 8.00e-04
Smp_126440.1 SmLINC02084-IBu -0.82 1.00e-04 1.70e-03
Smp_126440.1 SmLINC03485-IBu 0.86 3.02e-05 5.00e-04
Smp_126440.1 SmLINC03486-IBu 0.82 1.00e-04 2.10e-03
Smp_126440.1 SmLINC03849-IBu 0.93 2.36e-07 1.86e-05
Smp_126440.1 SmLINC04421-IBu -0.82 1.00e-04 2.00e-03
Smp_126440.1 SmLINC05147-IBu -0.81 2.00e-04 2.30e-03
Smp_126440.1 SmLINC05289-IBu -0.81 2.00e-04 2.70e-03
Smp_126440.1 SmLINC05604-IBu -0.82 1.00e-04 2.00e-03
Smp_126440.1 SmLINC05720-IBu 0.82 1.00e-04 1.90e-03
Smp_126440.1 SmLINC06024-IBu -0.90 3.98e-06 1.00e-04
Smp_126440.1 SmLINC06535-IBu 0.83 9.51e-05 1.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_126440.1 0 -0.22 -1.00 -4.55 -4.91
Smp_206250.1 0 -0.30 -1.54 -11.39 -11.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_206250.1 Smp_126440.1 0.96 5.94e-09 1.62e-06